PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_12680V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 723aa    MW: 81317.6 Da    PI: 7.1386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_12680V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.8e-101212021598
                        -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          v+pk f++ hg+  ++ k   l  ++   +  ev +    + g++ +++GW+ Fv +n Lk gD+++F+++ +++f  +v+vf+
  Pp3c7_12680V3.2.p 121 EAVIPKAFMDLHGSGLRGCKVADLIGSNRvlQLVEVHV--AATTGAVSFRQGWEVFVTDNYLKPGDSLLFTMVAKNSF--TVRVFS 202
                        469******99965555655666666555555556666..99999**************************9987888..888886 PP
2B345.61.2e-14360453198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f  v++ps+v +  +l++p +f + h+  +++ +t+t++de g +W  +     +s +  l++GW  F +++ L+egD +vF++ + +   l
  Pp3c7_12680V3.2.p 360 FMVVMMPSHVYRGFWLTVPQEFSRLHM--PRKRTTITVQDEFGFQWPGQW--VVNSLHGGLSDGWAAFSRDHYLEEGDACVFEVLNLKIPLL 447
                        7889*******************9998..456679***************..55555556***********************654455556 PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v++fr
  Pp3c7_12680V3.2.p 448 LVHIFR 453
                        777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-107087IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0037120204IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-10121201IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-7121202IPR003340B3 DNA binding domain
CDDcd100173.35E-11123202No hitNo description
Gene3DG3DSA:2.40.330.101.0E-10123202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.91167204IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19353453IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-22355456IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-20358453No hitNo description
PROSITE profilePS5086312.647360455IPR003340B3 DNA binding domain
PfamPF023624.3E-13360453IPR003340B3 DNA binding domain
SMARTSM010191.2E-12360455IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MQGAVRSVCK KTCEYFHNRV HSWWSMLERV MDPSTAHTHP AEKSEGSHKE SLPQAAPASG  60
LGKFDTLSTT PLCFLKTVVE NDLRSNFVSS FRFFFNASAC SKDNPFRMLI DRWKGSETLF  120
EAVIPKAFMD LHGSGLRGCK VADLIGSNRV LQLVEVHVAA TTGAVSFRQG WEVFVTDNYL  180
KPGDSLLFTM VAKNSFTVRV FSGVGLESVP HPVNLTSSYT TQDQVLTPES QSKSTCCKEV  240
EDSEELAFGV EIDGSESCDH EGPGTGCGAT DPGDVNHDHG PSISEILKQH GYTAERKRDK  300
IGRALRHKRS HHVREGSFAL EPGWNPTEWR SRRRPVTAEE RDRVRAAALK FESQTKRPSF  360
MVVMMPSHVY RGFWLTVPQE FSRLHMPRKR TTITVQDEFG FQWPGQWVVN SLHGGLSDGW  420
AAFSRDHYLE EGDACVFEVL NLKIPLLLVH IFRVVEVPLL PGSRGGWDVH YRVVNNISRN  480
KSLGIPLSEG HSLAQELPGD NTVETIGGNS QKTRRSLIEE LQTMVMNDHF SKRRREDFPP  540
RAPGFKARNE ACEEDVKPDI TPPEQIQSLW PPDSPVYLSP ESMHVKVESR NANQSHTPTS  600
LHASPEVKIE PFVAAEREGI CCEDSLKKGS HISVYTRRRR SDAAPNIATK PTKSEKDATV  660
WYRVISIRNR RTVKTEEEFC VEIDHTVPEH GSDYKDVERG PDGLWWVPRS HFEGDYSICR  720
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1633145622144B3 domain-containing transcription factor VRN1
4i1k_B1e-1633145622144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KBG70.0A0A2K1KBG7_PHYPA; Uncharacterized protein
STRINGPP1S75_174V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-17B3 family protein