PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_1494V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 659aa    MW: 73371.5 Da    PI: 6.6455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_1494V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.8e-1072926571374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 
                       lv+lLl cAea+s++++ la+ +L+rl+ +  p  ++mqRlaa+f+ AL+ar+++  +++ yk l+   +++    + l+++++ ++ +P++k
  Pp3c7_1494V3.1.p 292 LVHLLLLCAEAISNQQMDLAHVVLTRLNAMLVPCTSTMQRLAAVFVDALHARITNsATTGRYKGLER--DNDVAILDMLQSFSVIYDHTPFIK 382
                       689***************************************************9444455554443..33446999**************** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       + hlt Nq Il+avege +vH+iD++ +  G+QWp ++qaLa Rp+gpp+lRiT++g+     ++ le+ +e+L+++A++l+vpfef +l + 
  Pp3c7_1494V3.1.p 383 LPHLTLNQIILDAVEGEPHVHVIDLNTGwRGMQWPGFIQALALRPGGPPKLRITAIGK-----ADDLEHSREKLQDYARHLQVPFEFCPL-VV 469
                       **************************9857****************************.....89************************6.77 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++++++++ L+++  E++ +n++ q h+ll      +++ +++L  +ksl+P+v+ ++e++adhns++Fl+rf+e+l+yysa++d+l+++lp+
  Pp3c7_1494V3.1.p 470 DMKSFDVRLLDMRDWEVVCINSANQFHQLL---IWGDECFHKFLCDLKSLNPRVLAFTENDADHNSPKFLNRFFECLRYYSAVYDALDSSLPN 559
                       8*****************************...555556779*************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                        s + + vE+ + g++i+n+va+eg++r+ rhe+l +W++r+e+aGF+pvp+s++a +qa lllr++  + gy++  e+g + lgW + +Lv 
  Pp3c7_1494V3.1.p 560 GSAALQQVEHLFTGQKIRNIVAMEGEDRITRHESLTSWSRRMEMAGFRPVPVSSRAISQAGLLLRMYFaQSGYTLRTENGNVSLGWDNMSLVG 652
                       *******************************************************************99************************ PP

              GRAS 370 vSaWr 374
                       +SaWr
  Pp3c7_1494V3.1.p 653 ASAWR 657
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.38266636IPR005202Transcription factor GRAS
PfamPF035146.2E-105292657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MADGDLASIF RQHTQPVSDP WGVAVPQHQL SHFQQMPQTL QDTDNVRWDY PNSLSPQSPF  60
DIQDHNSNFS TRMLQSKVGS YNHSYSSLRP STIPPQSHLQ FSTISPQLVE PVQSLQSQTL  120
SGNKRDFQGS SFQVQNKQPT RSAGRNIYSE VVTSTSPVGQ ENLVTVSHHQ SQFSGNNYNI  180
SHGQPSTWPT APTGCKVGEL ATELQPEILG DLRPGPGYLA DHYPGRLLQS GQAYNQNQNL  240
GPQGNPNDLP SGSGTLSSSL QQNFPGDDGM IRVLDTACSR RNQQTSATGL QLVHLLLLCA  300
EAISNQQMDL AHVVLTRLNA MLVPCTSTMQ RLAAVFVDAL HARITNSATT GRYKGLERDN  360
DVAILDMLQS FSVIYDHTPF IKLPHLTLNQ IILDAVEGEP HVHVIDLNTG WRGMQWPGFI  420
QALALRPGGP PKLRITAIGK ADDLEHSREK LQDYARHLQV PFEFCPLVVD MKSFDVRLLD  480
MRDWEVVCIN SANQFHQLLI WGDECFHKFL CDLKSLNPRV LAFTENDADH NSPKFLNRFF  540
ECLRYYSAVY DALDSSLPNG SAALQQVEHL FTGQKIRNIV AMEGEDRITR HESLTSWSRR  600
MEMAGFRPVP VSSRAISQAG LLLRMYFAQS GYTLRTENGN VSLGWDNMSL VGASAWRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6729965626378Protein SCARECROW
5b3h_A1e-6629965625377Protein SCARECROW
5b3h_D1e-6629965625377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99530.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380932.10.0DELLA protein RGL1-like
TrEMBLA0A2K1K9W00.0A0A2K1K9W0_PHYPA; Uncharacterized protein
STRINGPP1S130_63V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-74RGA-like 1