PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_1720V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 447aa    MW: 49658 Da    PI: 7.3646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_1720V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11345391455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR + ++ f+ Lr+l+P  +      K +Ka++L  A+ Y+k+Lq
  Pp3c7_1720V3.1.p 345 NHMLAERRRRVKQKENFAALRRLVPIiS------KADKASTLVDAITYLKDLQ 391
                       68899*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-16340413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.392341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16345411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-11345395No hitNo description
SMARTSM003539.3E-11347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MHDQSDTQLN SGTDTITKEN LFRLNSGTIP PATLDMTSPN ALANWALSEV DFRDSQNVNQ  60
RSMTRPTSHG LIIPQADQYR SWSGAATSSS MSSQGDSTAR FSGSPEPQQP QMRLNPPSNS  120
GSSTLDRASC SDRLSSQFTA NIRRTTSCGD QHEIQKALSF FEAQEKQEQW RQQPNIQLDP  180
ALTQAANLND KVDVQKMRLS SSAQQGNIRL PAQYESTNVQ KFPSQAWQHD PASLQKSIVD  240
PPIQLPQSSN ASLVNQASDF SGSLLRTHSL SEPEVVKEVD TYHLEVADIS CDQAPNMQHE  300
PRALASAVTQ NITSNLRGRR RWGAEHGSIR GSGPIHAGHD EAAINHMLAE RRRRVKQKEN  360
FAALRRLVPI ISKADKASTL VDAITYLKDL QKEVEELKAS KENIEQRYET LDKRCKELED  420
RNRQLVATLS KDQSNSFNNL NSMKSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380020.10.0uncharacterized protein LOC112284454 isoform X3
RefseqXP_024380021.10.0uncharacterized protein LOC112284454 isoform X3
TrEMBLA0A2K1K9Y90.0A0A2K1K9Y9_PHYPA; Uncharacterized protein
STRINGPP1S130_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.15e-14bHLH family protein