PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_1720V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 524aa    MW: 58369.5 Da    PI: 6.5792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_1720V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10422468455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR + ++ f+ Lr+l+P  +      K +Ka++L  A+ Y+k+Lq
  Pp3c7_1720V3.4.p 422 NHMLAERRRRVKQKENFAALRRLVPIiS------KADKASTLVDAITYLKDLQ 468
                       68899*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-16417490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.392418467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8422468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-11422472No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15422488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-11424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MFQIGPQLSC HQNTAANNPT NLESQQLSHR MWSESTEEIS PQRLDDLNQP FQSELTLSDQ  60
VWRSAISQSL SPNPGIYMHD QSDTQLNSGT DTITKENLFR LNSGTIPPAT LDMTSPNALA  120
NWALSEVDFR DSQNVNQRSM TRPTSHGLII PQADQYRSWS GAATSSSMSS QGDSTARFSG  180
SPEPQQPQMR LNPPSNSGSS TLDRASCSDR LSSQFTANIR RTTSCGDQHE IQKALSFFEA  240
QEKQEQWRQQ PNIQLDPALT QAANLNDKVD VQKMRLSSSA QQGNIRLPAQ YESTNVQKFP  300
SQAWQHDPAS LQKSIVDPPI QLPQSSNASL VNQASDFSGS LLRTHSLSEP EVVKEVDTYH  360
LEVADISCDQ APNMQHEPRA LASAVTQNIT SNLRGRRRWG AEHGSIRGSG PIHAGHDEAA  420
INHMLAERRR RVKQKENFAA LRRLVPIISK ADKASTLVDA ITYLKDLQKE VEELKASKEN  480
IEQRYETLDK RCKELEDRNR QLVATLSKDQ SNSFNNLNSM KSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380019.10.0uncharacterized protein LOC112284454 isoform X2
TrEMBLA0A2K1K9Y90.0A0A2K1K9Y9_PHYPA; Uncharacterized protein
STRINGPP1S130_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.16e-14bHLH family protein