PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_18860V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 410aa    MW: 44276.6 Da    PI: 7.9532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_18860V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.26.7e-08166188123
                        ---SS-EEEEEEE--TT-SS-EE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                        ++Dg++WrKYGq + kg+ +pr+
  Pp3c7_18860V3.1.p 166 MNDGCQWRKYGQNTAKGNLCPRG 188
                        58*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-17151248IPR003657WRKY domain
SuperFamilySSF1182901.57E-7158188IPR003657WRKY domain
PROSITE profilePS5081117.236161248IPR003657WRKY domain
SMARTSM007741.4E-7166247IPR003657WRKY domain
PfamPF031066.7E-13167246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MNLHSERAKE TPHPPAQFSK EDEVKKTSTT VSSCSELDHG EPQYFLQESS STGNDAATVG  60
EHVSVVGEAE KEYIGNSTLH QELEASFHRG SQSFTAPSEV EEETSAFGSK RAFPDLNEAD  120
ALPESLPTSK AQRLANFTGA ILGAHSDPPV RKARVSVRTQ SDSTTMNDGC QWRKYGQNTA  180
KGNLCPRGLL PLYCGALLSR PQYEIWTLLK SDGCVMHTGE IIFKVQRCAH DKSVLITTYE  240
GTHNHPIPPA GTAMASTTSA AASMLLTSSK TSDVAHFTRD PTTQLCLRLG GSKTAPATRN  300
HFEASRETKT LDLTTSKKLD NLSSTAQFSL PCSRNSLHRV PKSVQTQAAP LSSSFSQARQ  360
QQLFVMMASI MCPGKYRGVR FLYRIGLAIF DGATGAASCA GDFSRNFSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KC650.0A0A2K1KC65_PHYPA; Uncharacterized protein
STRINGPP1S2_539V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.19e-27WRKY family protein