PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_19440V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 218aa    MW: 23962.7 Da    PI: 6.7387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_19440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-0583105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C + F++   L  H+++H
  Pp3c7_19440V3.2.p  83 YSCSFCQREFRTAQALGGHMNVH 105
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.84E-780110No hitNo description
Gene3DG3DSA:3.30.160.603.2E-481109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005583105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65583110IPR007087Zinc finger, C2H2
PfamPF139121.6E-583107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGTHMVLFPE HEHVRRSTSW GGMHDSDGGG SWGTPSSYGT HTQGGGNTWS KRIAANSAES  60
DSWEVRAFAE DASTSGQWPP RSYSCSFCQR EFRTAQALGG HMNVHRRERA QANQLAQLRS  120
GASSGSETPN STFNNASSDW IARGNSHDMQ SSSDYGRASS YEYPHAHVDS YQSYGGSSSS  180
YRNPILFNSP CESTWRSPHD KPLDSVDLEL RLGQRYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1278105229superman protein
2l1o_A1e-1278105229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379966.11e-160transcriptional regulator TAC1-like
TrEMBLA0A2K1KC761e-159A0A2K1KC76_PHYPA; Uncharacterized protein
STRINGPP1S2_490V6.11e-159(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-23zinc-finger protein 10