PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_20870V3.5.p

Common Name

PHYPADRAFT_64284

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 311aa MW: 34960.4 Da PI: 10.0834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_20870V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.4e-29	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++l+Wt+eLHe+F+ av qLGG++kAtPk+i ++m+ +g+t++h+kSHLQ+YR+ Pp3c7_20870V3.5.p 61 QKLKWTQELHECFMCAVFQLGGQDKATPKKIQQHMNKEGITIAHIKSHLQMYRS 114 89***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-26	57	114	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.977	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	5.02E-14	60	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	61	114	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-10	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MALHLNSSQG WNEIRRGKSH TLSPHPFASR MGNESSTIES FSTEFRRDRS NVRPYVRSSA 60 QKLKWTQELH ECFMCAVFQL GGQDKATPKK IQQHMNKEGI TIAHIKSHLQ MYRSGRINTD 120 GMPKSDFKSW QGGRWLVNSG EKQDRLAIGQ DPTHSASKLE ELSRNLELEP AAALIQLKTG 180 RNSELLRGTL GNHGFQGHMG EKSGGRMQLD YVTMSGINEK TPQFRENGEQ ESFEHTLDET 240 PNYRVPPSLK PFISDNSEDS TNSLSTRKRK AKGIEFNLTM PNRSLRPSFS LPCPSTVVEP 300 SLRLALSSMM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380574.1	0.0	myb family transcription factor PHL6-like
TrEMBL	A9RCZ9	0.0	A9RCZ9_PHYPA; Predicted protein
STRING	PP1S2_312V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-22	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_20870V3.5.p
Entrez Gene	5915178

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]