PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_20880V3.1.p
Common NamePHYPADRAFT_64283
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 863aa    MW: 96680.8 Da    PI: 7.3039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_20880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07803857247
                        SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        ++WT eE++ l ++v++  ++     +Wk+I +         Rt  ++k++w+++
  Pp3c7_20880V3.1.p 803 LPWTREEEDALMEGVRRISNNgewgfHWKRILQFGKgrfdPSRTYGDLKDKWRNL 857
                        69*******************************9889****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-12539598IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.8E-12546604IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.018550599IPR019787Zinc finger, PHD-finger
SMARTSM002494.2E-6552597IPR001965Zinc finger, PHD-type
SuperFamilySSF466897.02E-8799858IPR009057Homeodomain-like
PROSITE profilePS500907.445804858IPR017877Myb-like domain
CDDcd116601.80E-11804859No hitNo description
Gene3DG3DSA:1.10.10.602.4E-8804858IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MDARVSSTQS QVEASTPGLA WKWILQKLAD VPEFGVAFLN ELITTHVKDT EEAHCWPFLE  60
RVALRNLEEL VVSNQIDSDV IPLLKALIGQ DISSVTKGSS VKQRFNKELV LRVQTEVVLS  120
VLREDVNKGE RDWSSFASEL ERVFTEEADN GVLDRKRELS ALLKPKNQTE AVVAAYFNKY  180
CLKKLKDDLY TFIDEKKKSF KPMFLDQLLR DFLSSNGTPF PEELGDVKKF RKVDTHANQA  240
HVDTVNLESL PILTGALTNA NMNPQNVEHE AGNGLEFDKT GDENIVHGRR GRKRLRRKVL  300
SANHDIGDDE PEEMQEHNPR IKKPRRMIST SPVHSETVLH QDVSELALSK SISLKDNSPA  360
KHRAESLEQR SSLKRGKEGM SASGNFGLKS MRCCTPHVSA SMEKSEAYVG EPGRTNKCLS  420
VADVESDAET QVMKGLSTDG EEGNLIKRSN GDDHLKEMAE SSSHSESGSD QGDSQKIVAT  480
GVVKKKTLGS PSQRSISVDR RKKAPVLPSE DKIAQQRDIE KFLIKNEFIP LDAQDIYKFE  540
FLDVGDDGHE DVCHMCGLHG KLVCCDRCPI SMHFTCTEVL DLRLPKDEEE WYCPICVFTK  600
AAQVAAEANK VAAAAKEKLK TFMKESIKKQ SSSEGDALHQ LRQKKTQSEN IEQERTGNEN  660
IRQKKSKSLR KNGAGSVWES SVKCLLFNED AKKTERAPNT PDQNISRRRL LAESTSGQKT  720
KEKEISARPS KSSGPKDDSG EERVVQEAGV QELGSGAGDS RKVGGDKHDG DLDEDGGEKL  780
QNLDWDRFLS GRRKLPGFRR RPLPWTREEE DALMEGVRRI SNNGEWGFHW KRILQFGKGR  840
FDPSRTYGDL KDKWRNLSKG VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288296RRGRKRLRR
2483502KKKTLGSPSQRSISVDRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.114810.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380572.10.0uncharacterized protein LOC112284704 isoform X1
TrEMBLA9RCZ80.0A9RCZ8_PHYPA; Predicted protein
STRINGPP1S2_311V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1443713
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]