PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_20880V3.4.p
Common NamePHYPADRAFT_64283
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 661aa    MW: 73711.5 Da    PI: 7.7536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_20880V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.93.9e-07601655247
                        SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        ++WT eE++ l ++v++  ++     +Wk+I +         Rt  ++k++w+++
  Pp3c7_20880V3.4.p 601 LPWTREEEDALMEGVRRISNNgewgfHWKRILQFGKgrfdPSRTYGDLKDKWRNL 655
                        69*******************************9889****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.17E-12337396IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.9E-12344402IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.018348397IPR019787Zinc finger, PHD-finger
SMARTSM002494.2E-6350395IPR001965Zinc finger, PHD-type
SuperFamilySSF466894.99E-8597656IPR009057Homeodomain-like
PROSITE profilePS500907.445602656IPR017877Myb-like domain
CDDcd116601.03E-11602657No hitNo description
Gene3DG3DSA:1.10.10.601.7E-8602656IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MFLDQLLRDF LSSNGTPFPE ELGDVKKFRK VDTHANQAHV DTVNLESLPI LTGALTNANM  60
NPQNVEHEAG NGLEFDKTGD ENIVHGRRGR KRLRRKVLSA NHDIGDDEPE EMQEHNPRIK  120
KPRRMISTSP VHSETVLHQD VSELALSKSI SLKDNSPAKH RAESLEQRSS LKRGKEGMSA  180
SGNFGLKSMR CCTPHVSASM EKSEAYVGEP GRTNKCLSVA DVESDAETQV MKGLSTDGEE  240
GNLIKRSNGD DHLKEMAESS SHSESGSDQG DSQKIVATGV VKKKTLGSPS QRSISVDRRK  300
KAPVLPSEDK IAQQRDIEKF LIKNEFIPLD AQDIYKFEFL DVGDDGHEDV CHMCGLHGKL  360
VCCDRCPISM HFTCTEVLDL RLPKDEEEWY CPICVFTKAA QVAAEANKVA AAAKEKLKTF  420
MKESIKKQSS SEGDALHQLR QKKTQSENIE QERTGNENIR QKKSKSLRKN GAGSVWESSV  480
KCLLFNEDAK KTERAPNTPD QNISRRRLLA ESTSGQKTKE KEISARPSKS SGPKDDSGEE  540
RVVQEAGVQE LGSGAGDSRK VGGDKHDGDL DEDGGEKLQN LDWDRFLSGR RKLPGFRRRP  600
LPWTREEEDA LMEGVRRISN NGEWGFHWKR ILQFGKGRFD PSRTYGDLKD KWRNLSKGVS  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRGRKRLRR
2281300KKKTLGSPSQRSISVDRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.114810.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380572.10.0uncharacterized protein LOC112284704 isoform X1
TrEMBLA9RCZ80.0A9RCZ8_PHYPA; Predicted protein
STRINGPP1S2_311V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]