PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_23130V3.1.p
Common NamePHYPADRAFT_158535
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 537aa    MW: 59362.5 Da    PI: 9.1703
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_23130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.6e-15256338176
           trihelix   1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                        +Wt  e+l L+ +rr          +r + +++++ +W+ev + m +r + rs  qC+ekwe+l+ +++k+ ++++++ +  +
  Pp3c7_23130V3.1.p 256 KWTPAETLILVHLRRdhfvkypGQANRRNVRASAAERWSEVEDEMFKRNIMRSKSQCQEKWEQLASDFRKVYDHQRNHVPLGE 338
                        7**************666654444444445679*******************************************9976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.735249320IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5252319IPR009057Homeodomain-like
SMARTSM007174.2E-4253322IPR001005SANT/Myb domain
PfamPF138375.6E-12256332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MIAFWFGNFL YVVCKVINST HANCGRQILK QLREQVDHIT ALAGFQFVPN GQASGGQRES  60
VVRARPSPGN RRIGEPFEGG RGQPISSNRL KGEKFEDGSC VRGANPISSA GPVEEHIPAS  120
QAAQTIPSSL PTKSHGNQNI ASLAGSQSAP DVCFGGNCGE PPPSTQSPGL TSRLPWDQAE  180
RIAPLVGHRT MSYSRPPWNH VEHVSFKAGT QPASSCRSAM DVDGAEKGVT PQSDRNVDAR  240
SISKDPVTER TYKTGKWTPA ETLILVHLRR DHFVKYPGQA NRRNVRASAA ERWSEVEDEM  300
FKRNIMRSKS QCQEKWEQLA SDFRKVYDHQ RNHVPLGEPG YFQMNSAERK ERMLRFPKAQ  360
LDEAVYNALC EWYPRSSQVS SLGELPDNIS DDVAAVSRGN LTNDAPASEE HRPVQEDGIG  420
DSNSPHLTKR RRLSTKASEG AFSTIANNQK ESLNVNSMFV VQDREDARHK LLLEMNAKKH  480
RETLELKARI HQDKLIIEKE RLQQSAALGQ GYIAAMLSIA DALKAIGESL KKDKSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428432KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.117980.0gametophore| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380226.10.0uncharacterized protein LOC112284563 isoform X3
RefseqXP_024380227.10.0uncharacterized protein LOC112284563 isoform X3
TrEMBLA0A2K1KCN60.0A0A2K1KCN6_PHYPA; Uncharacterized protein
STRINGPP1S2_110V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-14Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]