PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_23340V3.2.p

Common Name

PHYPADRAFT_64165

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 463aa MW: 51050.1 Da PI: 8.9951

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_23340V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.5e-08	253	297	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 k + r NR + +rsR RK+ +i eLe v ++eae +L ++ Pp3c7_23340V3.2.p 253 KTAQRILANRQSDQRSRVRKLHYISELESNVGKIEAEVASLSPKI 297 56778889*****************************99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-5	249	313	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-7	253	307	No hit	No description
Pfam	PF00170	1.1E-6	253	298	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-8	255	318	No hit	No description
CDD	cd14703	4.97E-16	255	304	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MDSICAAEHH GQSVNWAHPT SNSTHPPHIS PHGFSMFSSS SFLETDGGFR IPLSLPIQGG 60 AHRRSPAGHI PQVSSAWLSD RLSSPDGEVV LKKCSHRRSA SDSVAFVDSS YQFMSYLENV 120 TEEDEFIRQE TALSTCMPNH RRGLSAGNDS NHHGLQCKLP ATPRSYPEKV ARGAQSSRRE 180 NFVKIGGVES YHRQHRHENL AACNREGFNF AKSGSLEVSW NAEKDKKHVT LAISSSKSDC 240 WLASRDSDQV DPKTAQRILA NRQSDQRSRV RKLHYISELE SNVGKIEAEV ASLSPKIRYH 300 EHERVLLNVE NVILKQKLAA LTKAQRLKEA LNESLKSEVQ RLRQMFNQEQ PPALQYPQQR 360 PLFLDVLDLQ FLEFSKLDLG PPTTKPKLPS VFEGVRGSSN RPSLYSTKVI SFIHAQDNNN 420 ADSPSSHAAK GLALPSCMAP GGKAYGGGLM ADASTSSLVN NS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MDSICAAEHH GQSVNWAHPT SNSTHPPHIS PHGFSMFSSS SFLETDGGFR IPLSLPIQGG  60
AHRRSPAGHI PQVSSAWLSD RLSSPDGEVV LKKCSHRRSA SDSVAFVDSS YQFMSYLENV  120
TEEDEFIRQE TALSTCMPNH RRGLSAGNDS NHHGLQCKLP ATPRSYPEKV ARGAQSSRRE  180
NFVKIGGVES YHRQHRHENL AACNREGFNF AKSGSLEVSW NAEKDKKHVT LAISSSKSDC  240
WLASRDSDQV DPKTAQRILA NRQSDQRSRV RKLHYISELE SNVGKIEAEV ASLSPKIRYH  300
EHERVLLNVE NVILKQKLAA LTKAQRLKEA LNESLKSEVQ RLRQMFNQEQ PPALQYPQQR  360
PLFLDVLDLQ FLEFSKLDLG PPTTKPKLPS VFEGVRGSSN RPSLYSTKVI SFIHAQDNNN  420
ADSPSSHAAK GLALPSCMAP GGKAYGGGLM ADASTSSLVN NS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	440	447	GGKAYGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379985.1	0.0	basic leucine zipper 61-like isoform X2
TrEMBL	A0A2K1KCS6	0.0	A0A2K1KCS6_PHYPA; Uncharacterized protein
STRING	PP1S2_72V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	5e-32	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_23340V3.2.p
Entrez Gene	5914951

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]