PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_23490V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 381aa    MW: 41647.4 Da    PI: 6.2261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_23490V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-182974148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rgr+++ Ed+ +v+++  lG++ W+tIa++++ gRt++++k++w++yl
  Pp3c7_23490V3.3.p 29 RGRFSEAEDQMIVHLHSILGNR-WSTIAAHLP-GRTDNEIKNYWNTYL 74
                       89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.286123IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-10935IPR009057Homeodomain-like
SuperFamilySSF466892.91E-211080IPR009057Homeodomain-like
PROSITE profilePS5129427.542478IPR017930Myb domain
SMARTSM007172.2E-172876IPR001005SANT/Myb domain
PfamPF002494.2E-162974IPR001005SANT/Myb domain
CDDcd001675.30E-133174No hitNo description
Gene3DG3DSA:1.10.10.602.3E-223675IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAGTCAGLMR CGKSCRLRWT NYLRPDIKRG RFSEAEDQMI VHLHSILGNR WSTIAAHLPG  60
RTDNEIKNYW NTYLKKRLLQ LGIDPVTHKE CSTADLVLEG ADMNPLVSST LSHMSQWDRV  120
RMETEARLTS ATSFSKSAVA GGIIHPRSSF SDLEAVLQRV LGSDTFMGPW KSQVATDSAS  180
QPIPGAASQA VFADLQNVFQ GLEASSPSSA SFESLYSACA NQLAESSSMN SHGSGHDDYH  240
SPVSSTITSS KLLNPMSPTS ILSPLSNSSD ILWDCNQDTS FWQTQQVNGL LMDSSTQTLP  300
EASSHNYDQD QLIGEPNLDA RYGDSSTRES TLRYLLPENC HSFYNLDFPQ YLLQTNCKST  360
AAQILSAAPH IIGNPVSGRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22107840108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379919.10.0transcription factor MYB41-like
RefseqXP_024379920.10.0transcription factor MYB41-like
TrEMBLA0A2K1KCT50.0A0A2K1KCT5_PHYPA; Uncharacterized protein
STRINGPP1S2_55V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.13e-53myb domain protein 106