PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_24030V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 444aa    MW: 48847.8 Da    PI: 6.6842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_24030V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-13176269186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        +W+++ + +L++a  e+ ++l rg+   + W+++++++            g+ ++++qC+ k +nl+kryk ++e ++      +s++ ++d
  Pp3c7_24030V3.3.p 176 EWSEHATTVLLQAFGEKYRALDRGNFTSKIWADIAARVnsrgsltgnIVDGIPKTQEQCRIKVDNLKKRYKVEREKKRVS-GSGTSKWIFYD 266
                        5********************************************99999***********************9999976.555669***** PP

           trihelix  84 qle 86 
                         ++
  Pp3c7_24030V3.3.p 267 MMD 269
                        998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-19176271No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMLQQHPHQH QHPGDGGGAG GGMEGLGACD DRHVVVGRMD LAPQVQGLRM LDEQQEHEQQ  60
QRILYGEKGL GDHEHDDMGK GQHPGHVVMY GDRGHENGHD HAHAYGVEMG NGKHGVVDDM  120
DAKLGGLSAV MLRVDGKMEG RDRQMSEGDV GTANSPQMGS QVAKLRGRSS RDPAIEWSEH  180
ATTVLLQAFG EKYRALDRGN FTSKIWADIA ARVNSRGSLT GNIVDGIPKT QEQCRIKVDN  240
LKKRYKVERE KKRVSGSGTS KWIFYDMMDE LIGANPRHMR SGGGMGGEDS PLGLEGGGTP  300
LGIRSSGEEG DRMYYLESAG GDGDQTSETI PKISPIQGRR KRKRALEDLE REHVNAPALM  360
ALFEGYNVPP AIIDAMLQED MDEYTLINSR DITVLLDQLR SKHRLHIKLG PAERIKQAIE  420
AAKEKKSSLA LVIQQQQQQQ QQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381307.10.0uncharacterized protein LOC112285053
RefseqXP_024381308.10.0uncharacterized protein LOC112285053
RefseqXP_024381309.10.0uncharacterized protein LOC112285053
RefseqXP_024381310.10.0uncharacterized protein LOC112285053
RefseqXP_024381311.10.0uncharacterized protein LOC112285053
TrEMBLA0A2K1KCU80.0A0A2K1KCU8_PHYPA; Uncharacterized protein
STRINGPP1S407_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-16sequence-specific DNA binding transcription factors