PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_25430V3.1.p
Common NameE2F2
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 415aa    MW: 45660.2 Da    PI: 4.8294
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_25430V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.68e-2781145170
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                        r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwk
  Pp3c7_25430V3.1.p  81 RYDSSLGLLTKKFIDLIKQADDGVLDLNKAADTL---HV--QKRRIYDITNVLEGIGLIEKKLKNRIRWK 145
                        6899******************************...99..****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-2877146IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.71E-1881144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-3381146IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-2483145IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.66E-32161262No hitNo description
CDDcd146603.40E-49162262No hitNo description
PfamPF164211.1E-33162261IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLPYQMKRR NKSEERHEVE MNGWNEYVNS DLSPAPTPSG PRARVSRPKA GKQAKNCPLT  60
PRPLGAGSPT SSAPTPTSTC RYDSSLGLLT KKFIDLIKQA DDGVLDLNKA ADTLHVQKRR  120
IYDITNVLEG IGLIEKKLKN RIRWKSLGMV RAADTTHGAG GLQAEVKDLY SEEKKLDESI  180
SEMREQLRSL SEDDHNKQWL YVTEDDIKNL PCFQNETLIA IKAPLGTTLE VPDPDEAVEY  240
PHRRFQILLR STMGPIDVYL VSRFEGKFEE MNSSEMSIEV GQSVPQAAGA SSPADAMSHE  300
EIVSMVPDIG YDLTNLESPG SHEPASQSSG PTNSHPELAG GIMRTAPAEV TTDTDYWLLS  360
DAGVGISDMW RTDQSNGMWD DVMRLNSEFG IENIGSPRPH TPPSSNVLEV VPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-2576148275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.193770.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473380.0AB547338.1 Physcomitrella patens E2F;2 mRNA for E2F transcription factor;2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381638.10.0transcription factor E2FA-like isoform X3
TrEMBLG1UDF80.0G1UDF8_PHYPA; E2F transcription factor2
STRINGPP1S97_96V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-103E2F transcription factor 3