PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_26110V3.1.p
Common NamePHYPADRAFT_233706
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 416aa    MW: 45912.8 Da    PI: 7.877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_26110V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08210254554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h  rEr+RRd++ s+f+ L +llP        K + ++i+e  + ++k+L
  Pp3c7_26110V3.1.p 210 HILRERQRRDDMTSKFAILESLLPIG-----VKRDRSTIVEDSIAHLKNL 254
                        899*********************97.....69**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.138205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9208271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-11209271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6210254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-8210259No hitNo description
SMARTSM003539.2E-7211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVMLTLVEVA HDVMGLSRGG FQPGRDLNPY GRESYGAADG NVGLQQSLND FIQSTLLQQQ  60
EVGLEQCGAS QHVDTAGLMS GELYGACAPS MGFSLPSMDM DRGMGLFEDV LPQVVGHEKH  120
YNVPVSVVSS MPYGTTPSVR LGRTHVDVAP VGLQSQIVRE RWVEAPLTTQ RPLKQETGLC  180
HTELKLRKVI DKSSRTMDVK QKRPPEQSDH ILRERQRRDD MTSKFAILES LLPIGVKRDR  240
STIVEDSIAH LKNLHHRIEE LQGRRSDLQR ATTVKLDRKR ARVHPEGAAE VLQPYEGGPS  300
KSRETPAAAQ IPSISQDEMR NIHDLLGNCL EKMEVHADRP RQVVIEMVCK PRPRLQSVIL  360
QCLEALKLDV MHCSITKVAQ RLIVVIIAKP VEVTVSTSGI VAALKYALGS GETTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.52810.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381267.10.0transcription factor NAI1-like
TrEMBLA0A2K1KD530.0A0A2K1KD53_PHYPA; Uncharacterized protein
STRINGPP1S97_176V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9572213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-09bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]