PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7550V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 386aa    MW: 42812.5 Da    PI: 10.3045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7550V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31316373359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gC ++k+vers ed ++++itYegeHnh+
  Pp3c7_7550V3.1.p 316 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCLARKHVERSLEDSSMLIITYEGEHNHS 373
                       99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.6E-18267312IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-32304373IPR003657WRKY domain
PROSITE profilePS5081130.194309375IPR003657WRKY domain
SuperFamilySSF1182902.09E-26312374IPR003657WRKY domain
SMARTSM007747.1E-38314374IPR003657WRKY domain
PfamPF031062.6E-26316372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MELLTESASS LIKERDHEAE QATRMGLENA KQLLRSLAHS ESYQGNQASL DMEASIAAGA  60
AISRFQKVVT LLSRTGHARF RRGPAGLSNV LGPSTNSTQY GMKRKRDFPF PSSTPPQYPH  120
VPDEVLVSFQ HRQQQLHYPQ QHLLAQAKQF IPPQVSASLG ASLGSGGSGM NHLQLNHHRL  180
QQLHLQQMHQ HLQQQLWSPL QQRNQQGYHS MIQEISLGKS ELGRSLERGP ETTTSKSFAS  240
VCLDGSVDSD KVHNFTPERR AQGPPTKKKC MGKADEGSGK CATAGRCHCS KRRKLKVKRI  300
IRVPAISSKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCLARK HVERSLEDSS  360
MLIITYEGEH NHSRSTSVSA ALLCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20302373272WRKY transcription factor 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379590.10.0probable WRKY transcription factor 11 isoform X1
TrEMBLA0A2K1KAV00.0A0A2K1KAV0_PHYPA; Uncharacterized protein
STRINGPP1S42_169V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-49WRKY DNA-binding protein 21