PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7550V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 344aa    MW: 37989.8 Da    PI: 9.8219
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7550V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.77.3e-162923312159
                       -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        r+YY+C+s  gC ++k+vers ed ++++itYegeHnh+
  Pp3c7_7550V3.2.p 292 RRGYYKCSSMrGCLARKHVERSLEDSSMLIITYEGEHNHS 331
                       69*****9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.1E-10282332IPR003657WRKY domain
PfamPF031061.7E-12290330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-15291331IPR003657WRKY domain
SuperFamilySSF1182901.96E-12291332IPR003657WRKY domain
PROSITE profilePS5081117.764293333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MELLTESASS LIKERDHEAE QATRMGLENA KQLLRSLAHS ESYQGNQASL DMEASIAAGA  60
AISRFQKVVT LLSRTGHARF RRGPAGLSNV LGPSTNSTQY GMKRKRDFPF PSSTPPQYPH  120
VPDEVLVSFQ HRQQQLHYPQ QHLLAQAKQF IPPQVSASLG ASLGSGGSGM NHLQLNHHRL  180
QQLHLQQMHQ HLQQQLWSPL QQRNQQGYHS MIQEISLGKS ELGRSLERGP ETTTSKSFAS  240
VCLDGSVDSD KVHNFTPERR AQGPPTKKKC MGKADEGSGK CATAGRCHCS KRRGYYKCSS  300
MRGCLARKHV ERSLEDSSML IITYEGEHNH SRSTSVSAAL LCT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379591.10.0probable WRKY transcription factor 21 isoform X2
TrEMBLA0A2K1KAV00.0A0A2K1KAV0_PHYPA; Uncharacterized protein
STRINGPP1S42_169V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-21WRKY DNA-binding protein 21