PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7950V3.6.p
Common NamePHYPADRAFT_162363
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 414aa    MW: 46034.1 Da    PI: 7.3414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7950V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11222269355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k L+
  Pp3c7_7950V3.6.p 222 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKTLE 269
                       5699************************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16222283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16223280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-12224273No hitNo description
SMARTSM003539.9E-14225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEDHQLVRQF DPLFNQTSVE QYGGGLPSGS SNDYVAPLES LKQQKERQSF ADLDGFYHQE  60
RPQKMLKPNC YEPNLSNFQY QANPHWNTSM SFSSGLDFMT FATHQPSGQN PHQKQEHQML  120
PQQLDTYAMP VQHLHDDGAL HPRTPGSRVD SGSSAVSLGA NGSKLDALSM EVLRGSSPLS  180
SIEYVQQGKQ KITGFFSPNG GGSRLSMPTQ PPPPVKSTGH TQDHIMAERK RREKLSQRFI  240
ALSAIVPGLK KMDKASVLGD AIKYVKTLEE KLKTMEERLP KKRIRSLSNK KSSQPSTTPG  300
PVSQGESKPA VVVKQQLSDD VVDEDDCSQP EIEARKIDKN VLIRMHCEKR KSLLVKSLAE  360
LEKMKLVILN ANILSFSAAT VDLTCCAQMS EGCEVNTDEI VRCLQELYYT LDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14223279865Transcription factor MYC2
5gnj_B2e-14223279865Transcription factor MYC2
5gnj_E2e-14223279865Transcription factor MYC2
5gnj_F2e-14223279865Transcription factor MYC2
5gnj_G2e-14223279865Transcription factor MYC2
5gnj_I2e-14223279865Transcription factor MYC2
5gnj_M2e-14223279865Transcription factor MYC2
5gnj_N2e-14223279865Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232ERKRRE
2228233RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.73030.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380776.10.0transcription factor bHLH25-like isoform X1
RefseqXP_024380777.10.0transcription factor bHLH25-like isoform X1
RefseqXP_024380778.10.0transcription factor bHLH25-like isoform X1
RefseqXP_024380779.10.0transcription factor bHLH25-like isoform X2
TrEMBLA0A2K1KAX70.0A0A2K1KAX7_PHYPA; Uncharacterized protein
STRINGPP1S42_136V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-34bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]