PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_9340V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 288aa    MW: 31600.8 Da    PI: 8.4377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_9340V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.56e-356100194
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq  + + 
  Pp3c7_9340V3.6.p   6 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQTWSCSI 98 
                       7***********************9989***********************************************************987765 PP

            DUF260  93 el 94 
                        +
  Pp3c7_9340V3.6.p  99 AI 100
                       55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.9025107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-34694IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAE QGAARFAAVH KIFGASNVAK LLLHIPVPRR  60
CDAVLTISYE AQARLSDPVY GCVATIFALQ QQTWSCSIAI ARQCDAIGRS PTIKEYRRCR  120
SSSINEFTAC NRVSKNWVAS LQAELAMVQA QLVNRQAVVH QIHQHQQQHH QHHHHLQQQH  180
EQISTMSPGH VPSSAYMQQH EHSQLSPSDI SMSIPSGSGS VKEEGNSFLG MQHYGDLGLG  240
SSSLEPMSGN QHSLLENIHK PRGGGENIEQ TDHEGDLQAL ALLLRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-32393897LOB family transfactor Ramosa2.1
5ly0_B1e-32393897LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389181.11e-119LOB domain-containing protein 29-like
RefseqXP_024389182.11e-119LOB domain-containing protein 29-like
RefseqXP_024389183.11e-119LOB domain-containing protein 29-like
RefseqXP_024389184.11e-119LOB domain-containing protein 29-like
RefseqXP_024389185.11e-119LOB domain-containing protein 29-like
RefseqXP_024389186.11e-119LOB domain-containing protein 29-like
RefseqXP_024389187.11e-119LOB domain-containing protein 29-like
SwissprotQ9SRV32e-50LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2K1JUB41e-117A0A2K1JUB4_PHYPA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-53LOB domain-containing protein 20