PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16730V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 639aa    MW: 65325.6 Da    PI: 9.8045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16730V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09155197344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         WT+eEd+ l+ av ++G g+W+t+ +      R++ q+  rw
  Pp3c8_16730V3.2.p 155 LWTPEEDLALIAAVDKYGEGNWTTVLKNHYdFDRSASQLSQRW 197
                        5************************986444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-14146201IPR009057Homeodomain-like
PROSITE profilePS5129415.993148205IPR017930Myb domain
SuperFamilySSF466897.59E-13150203IPR009057Homeodomain-like
SMARTSM007172.0E-6152203IPR001005SANT/Myb domain
PfamPF002498.3E-8155197IPR001005SANT/Myb domain
CDDcd116601.53E-12156202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MVLRSCHMFR YSVLTLRICS FQDDDSDLDV ELDPVPTVSA AVAESISSFV KTDLQQHEHD  60
ELMEHNAGQA GVGHQAADNA VVNKQQGSGL LVKPDESAEL VPIPNTAGVP YLASATQCAA  120
THGESAAILS CSTSTKAAYP AAVMNQSDAR KRRRLWTPEE DLALIAAVDK YGEGNWTTVL  180
KNHYDFDRSA SQLSQRWALI RKRREVQEKA GYGGSGVSLL ASGYNNIERL DGPKPGTLAG  240
PGMQKDTGRP GDKAMPFGNA PTPMKQPPSS ASTVPVGKRN PGATTPSGTE TTASVLETQR  300
ARALPAPGVS TSRAGVPAQR PQAHNQTSMR GGATAGASTA LQTLKGAVHE GSAGGSHTHA  360
SAVWRPGQGS AVGNQMFYTS TQPVTSSVPM DSKYSASRNM TTGVSRGGSK GVHGPDPMIQ  420
AAAMAAGARI APASTAASLL KAAQSGNVVH IGSGGLPRSK LGLSNQAGNG NAGGSSGIIH  480
YIRTGSGGSS LATSNTSLQR TTSHHMSKNH LNRAPHPVGN SSPSPVPTVP PQAARNNSQV  540
PSQAGKPSPT SRVPATRGSS PQQQMTAPAL TPASTPASTT ASTSSSTPAS TSTPAPLSTS  600
AVTPPQTSLS TPSTSVPTPA CGFCTTEPIA DIPGEGTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153RKRRR
2150154KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383368.10.0mucin-19-like isoform X1
TrEMBLA0A2K1K7K40.0A0A2K1K7K4_PHYPA; Uncharacterized protein
STRINGPP1S114_137V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.12e-15MYB_related family protein