PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16730V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 608aa    MW: 62248.1 Da    PI: 10.0357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16730V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09124166344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         WT+eEd+ l+ av ++G g+W+t+ +      R++ q+  rw
  Pp3c8_16730V3.5.p 124 LWTPEEDLALIAAVDKYGEGNWTTVLKNHYdFDRSASQLSQRW 166
                        5************************986444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-14115170IPR009057Homeodomain-like
PROSITE profilePS5129415.993117174IPR017930Myb domain
SuperFamilySSF466896.83E-13119172IPR009057Homeodomain-like
SMARTSM007172.0E-6121172IPR001005SANT/Myb domain
PfamPF002497.2E-8124166IPR001005SANT/Myb domain
CDDcd116601.40E-12125171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MVLRSCHMFR YSVLTLRICS FQDDDSDLDV ELDPVPTVSA AVAESISSFV KTDLQQHEHD  60
ELMEHNAGQA GVGHQAADNA VVNKQQCAAT HGESAAILSC STSTKAAYPA AVMNQSDARK  120
RRRLWTPEED LALIAAVDKY GEGNWTTVLK NHYDFDRSAS QLSQRWALIR KRREVQEKAG  180
YGGSGVSLLA SGYNNIERLD GPKPGTLAGP GMQKDTGRPG DKAMPFGNAP TPMKQPPSSA  240
STVPVGKRNP GATTPSGTET TASVLETQRA RALPAPGVST SRAGVPAQRP QAHNQTSMRG  300
GATAGASTAL QTLKGAVHEG SAGGSHTHAS AVWRPGQGSA VGNQMFYTST QPVTSSVPMD  360
SKYSASRNMT TGVSRGGSKG VHGPDPMIQA AAMAAGARIA PASTAASLLK AAQSGNVVHI  420
GSGGLPRSKL GLSNQAGNGN AGGSSGIIHY IRTGSGGSSL ATSNTSLQRT TSHHMSKNHL  480
NRAPHPVGNS SPSPVPTVPP QAARNNSQVP SQAGKPSPTS RVPATRGSSP QQQMTAPALT  540
PASTPASTTA STSSSTPAST STPAPLSTSA VTPPQTSLST PSTSVPTPAC GFCTTEPIAD  600
IPGEGTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122RKRRR
2119123KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383369.10.0mucin-19-like isoform X2
TrEMBLA0A2K1K7K40.0A0A2K1K7K4_PHYPA; Uncharacterized protein
STRINGPP1S114_137V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.12e-15MYB_related family protein