PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16730V3.9.p
Common NamePHYPADRAFT_166389
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 669aa    MW: 68948.7 Da    PI: 9.6338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16730V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-09185227344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         WT+eEd+ l+ av ++G g+W+t+ +      R++ q+  rw
  Pp3c8_16730V3.9.p 185 LWTPEEDLALIAAVDKYGEGNWTTVLKNHYdFDRSASQLSQRW 227
                        5************************986444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-14176231IPR009057Homeodomain-like
PROSITE profilePS5129415.993178235IPR017930Myb domain
SuperFamilySSF466897.59E-13180233IPR009057Homeodomain-like
SMARTSM007172.0E-6182233IPR001005SANT/Myb domain
PfamPF002498.8E-8185227IPR001005SANT/Myb domain
CDDcd116601.65E-12186232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAPVKLPFAD TDLAPLVKRY SASTIVTMLR EIARCKSPKL DWVMLCKSTV TGITNPKEYQ  60
AVWRSLAYRA ELEDSFEDNE APLDDDSDLD VELDPVPTVS AAVAESISSF VKTDLQQHEH  120
DELMEHNAGQ AGVGHQAADN AVVNKQQCAA THGESAAILS CSTSTKAAYP AAVMNQSDAR  180
KRRRLWTPEE DLALIAAVDK YGEGNWTTVL KNHYDFDRSA SQLSQRWALI RKRREVQEKA  240
GYGGSGVSLL ASGYNNIERL DGPKPGTLAG PGMQKDTGRP GDKAMPFGNA PTPMKQPPSS  300
ASTVPVGKRN PGATTPSGTE TTASVLETQR ARALPAPGVS TSRAGVPAQR PQAHNQTSMR  360
GGATAGASTA LQTLKGAVHE GSAGGSHTHA SAVWRPGQGS AVGNQMFYTS TQPVTSSVPM  420
DSKYSASRNM TTGVSRGGSK GVHGPDPMIQ AAAMAAGARI APASTAASLL KAAQSGNVVH  480
IGSGGLPRSK LGLSNQAGNG NAGGSSGIIH YIRTGSGGSS LATSNTSLQR TTSHHMSKNH  540
LNRAPHPVGN SSPSPVPTVP PQAARNNSQV PSQAGKPSPT SRVPATRGSS PQQQMTAPAL  600
TPASTPASTT ASTSSSTPAS TSTPAPLSTS AVTPPQTSLS TPSTSVPTPA CGFCTTEPIA  660
DIPGEGTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183RKRRR
2180184KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383369.10.0mucin-19-like isoform X2
TrEMBLA0A2K1K7K40.0A0A2K1K7K4_PHYPA; Uncharacterized protein
STRINGPP1S114_137V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.13e-15MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]