PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16910V3.2.p
Common NameN3, PHYPADRAFT_166399
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 486aa    MW: 53857.1 Da    PI: 8.2257
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31332385255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pp3c8_16910V3.2.p 332 PRMRWTSTLHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 385
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-15329386IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28330385IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24332385IPR006447Myb domain, plants
PfamPF002494.9E-7333384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MQELSPDKSM SVSSSSNTHS GPDLALHISP PSSSSCDRRL KSSSQYSNLQ VVPDHVHGFD  60
LWKQPTKSMS CITDSESNVS SPAAEGYSPA YVNSMGASTV LCLANPPLDS QYVKRALPKS  120
TADEGMVIGR REEVQESVQE NGYICKGLAH PFLLDNWSES IRISPDRVSS PSDRIRKDLP  180
RTFSIYPNET QENFTRRLSE SSIDDLYSQQ RVFSRPNYTS SHPSPIHELS LGRWSDPGVH  240
PEALPSRDLP KFQNYYMVGM DSCHRFSHQY GLENGKNMLG MQASTCGGNL STLLGNYGAG  300
YNAKREGVYA NVTSFRSHFP PRSPAKRSIR APRMRWTSTL HAHFVQAVEL LGGHERATPK  360
SVLELMNVKD LTLAHVKSHL QMYRTVKTSD KSGPPSGSRD PSPTSSLDSR LTTEELLMSD  420
SMSQTGRSVH MSNSTMHNLE LGNYRSLGDS QDATVSMQNR VWLPENPQNF NQAQRGCWKF  480
GTLSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-17333387357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-17333387357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-17333387357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-17333387357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17333387458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182480.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382995.10.0uncharacterized protein LOC112285891
TrEMBLA0A2K1K7L30.0A0A2K1K7L3_PHYPA; Uncharacterized protein
STRINGPP1S114_151V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-36G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]