PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_17290V3.2.p

Common Name

PHYPADRAFT_166411

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 430aa MW: 48277.8 Da PI: 9.5064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_17290V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	182	228	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h rEr+RR ++ s+f+ L ++lP K +Ka ++e A++ +k+Lq Pp3c8_17290V3.2.p 182 EHILRERKRRLDMASKFQVLESILPAG-----IKREKAVVVEDAIKLVKMLQ 228 5999*******************96.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.808	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-8	182	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	182	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-10	182	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-5	183	228	No hit	No description
SMART	SM00353	2.0E-4	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS 60 VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS 120 VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP 180 EEHILRERKR RLDMASKFQV LESILPAGIK REKAVVVEDA IKLVKMLQLR KEELLKRRSN 240 LKLELLIQSS EAPRYRRQSK TCPVPRKAGD KKFDAIQSNQ PKHIIYKGGD LLKQIPPIVD 300 RGKPINTAWM TGNPQNLIVP TSVHHNTAAS RDIISPENLR IHAQVSEEEI LVEIFLHRYP 360 FNLQIRLFQS MESLKLDVVR CSILRLPFEF VECFIVAKPY VDSITWRLHE VRTAASVLIE 420 ALQANFKRV*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS  60
VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS  120
VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP  180
EEHILRERKR RLDMASKFQV LESILPAGIK REKAVVVEDA IKLVKMLQLR KEELLKRRSN  240
LKLELLIQSS EAPRYRRQSK TCPVPRKAGD KKFDAIQSNQ PKHIIYKGGD LLKQIPPIVD  300
RGKPINTAWM TGNPQNLIVP TSVHHNTAAS RDIISPENLR IHAQVSEEEI LVEIFLHRYP  360
FNLQIRLFQS MESLKLDVVR CSILRLPFEF VECFIVAKPY VDSITWRLHE VRTAASVLIE  420
ALQANFKRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	191	ERKRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382108.1	0.0	uncharacterized protein LOC112285477 isoform X2
TrEMBL	A0A2K1K7Q0	0.0	A0A2K1K7Q0_PHYPA; Uncharacterized protein
STRING	PP1S114_191V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	9e-06	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c8_17290V3.2.p
Entrez Gene	5932632

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]