PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_17290V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 445aa MW: 49776.6 Da PI: 9.6292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_17290V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	182	243	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 h rEr+RR ++ s+f+ L ++lP ps +Ka ++e A++ +k+Lq Pp3c8_17290V3.3.p 182 EHILRERKRRLDMASKFQVLESILPAGIkivvamnsasLKPSLSREKAVVVEDAIKLVKMLQ 243 5999********************777***99999999**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.347	178	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.27E-8	182	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-5	182	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	182	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.44E-4	183	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS 60 VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS 120 VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP 180 EEHILRERKR RLDMASKFQV LESILPAGIK IVVAMNSASL KPSLSREKAV VVEDAIKLVK 240 MLQLRKEELL KRRSNLKLEL LIQSSEAPRY RRQSKTCPVP RKAGDKKFDA IQSNQPKHII 300 YKGGDLLKQI PPIVDRGKPI NTAWMTGNPQ NLIVPTSVHH NTAASRDIIS PENLRIHAQV 360 SEEEILVEIF LHRYPFNLQI RLFQSMESLK LDVVRCSILR LPFEFVECFI VAKPYVDSIT 420 WRLHEVRTAA SVLIEALQAN FKRV*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS  60
VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS  120
VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP  180
EEHILRERKR RLDMASKFQV LESILPAGIK IVVAMNSASL KPSLSREKAV VVEDAIKLVK  240
MLQLRKEELL KRRSNLKLEL LIQSSEAPRY RRQSKTCPVP RKAGDKKFDA IQSNQPKHII  300
YKGGDLLKQI PPIVDRGKPI NTAWMTGNPQ NLIVPTSVHH NTAASRDIIS PENLRIHAQV  360
SEEEILVEIF LHRYPFNLQI RLFQSMESLK LDVVRCSILR LPFEFVECFI VAKPYVDSIT  420
WRLHEVRTAA SVLIEALQAN FKRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	191	ERKRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382107.1	0.0	uncharacterized protein LOC112285477 isoform X1
TrEMBL	A0A2K1K7Q0	0.0	A0A2K1K7Q0_PHYPA; Uncharacterized protein
STRING	PP1S114_191V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c8_17290V3.3.p