PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_21660V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 208aa    MW: 23191 Da    PI: 8.1206
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_21660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.1e-43101101101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC+l+pyfp +qpk+f+nvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk 
  Pp3c8_21660V3.2.p  10 ACAACKYQRRKCTSDCPLSPYFPPDQPKRFQNVHKLFGVSNILRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITILQNQVSKLKD 101
                        7******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        ela+++e+l
  Pp3c8_21660V3.2.p 102 ELAVVREQL 110
                        ****99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4269110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4110107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTGSGSTNTA CAACKYQRRK CTSDCPLSPY FPPDQPKRFQ NVHKLFGVSN ILRILKHVDP  60
SKREDTVKSI AYEADTREKD PVHGCLGVIT ILQNQVSKLK DELAVVREQL YLLQQQHNFN  120
QQAQVQQIVG SLGGNTSVVN VSSGQETNVL IQQLQEYNGM NHLSSDFAKS NLLSISCFES  180
DQYLRNDKYD IKSASSSRFD VGRDESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3831447131LOB family transfactor Ramosa2.1
5ly0_B7e-3831447131LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383296.11e-150LOB domain-containing protein 6-like isoform X2
TrEMBLA0A2K1K8971e-147A0A2K1K897_PHYPA; Uncharacterized protein
STRINGPP1S134_49V6.11e-153(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-43LOB domain-containing protein 25