PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_25530V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 257aa    MW: 27632.2 Da    PI: 9.251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_25530V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-0657691426
                       --TTTTT-SS-SS CS
            zf-CCCH 14 tCkyGdrCkFaHg 26
                        C++Gd CkFaHg
  Pp3c8_25530V3.1.p 57 KCRRGDACKFAHG 69
                       6***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.0475171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-65175IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-45769IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
YEGVQGTMEG IVRVRVPGMQ GTMEGIVRGR VSREPGYDGG CCKRKGIMGS RNFRNEKCRR  60
GDACKFAHGV FEYRPHPARY LAQPCKDGTG GRSGGSYAGS PQAGVAMSHD GAFGLTLVGH  120
AQYPSQVSPP LSPSGLPPPS PRLAEEWEKL AGLFSSAVSV HWRHLDRLNS MPTVSILSAR  180
EHRMLNSGMH PGSARTSPEG SVPGTPTKVK ENDDEELMVQ RAESGQIEGT AGPGPSERPV  240
CRNLFWPSGI RYTFQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378736.12e-28zinc finger CCCH domain-containing protein 35-like
RefseqXP_024378891.12e-28zinc finger CCCH domain-containing protein 35-like isoform X1
RefseqXP_024378892.12e-28zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBLA0A2K1K8R80.0A0A2K1K8R8_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S177_93V6.19e-28(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-10C3H family protein