PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_440V3.1.p

Common Name

PHYPADRAFT_150953

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 36661.3 Da PI: 4.6829

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_440V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.5e-18	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+lg+ rqV vWFqNrRa++k Pp3c8_440V3.1.p 92 KKRRLTLDQVRSLERNFEVENKLEPDRKMQLAKELGMRPRQVAVWFQNRRARWK 145 456899***********************************************9 PP
2	HD-ZIP_I/II	117.5	7.3e-38	91	183	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qv++LE++Fe e+kLep+rK++la+eLg++prqvavWFqnrRAR+ktkqlE+dye+L + +++lk++ e + +e++ L++el++ Pp3c8_440V3.1.p 91 EKKRRLTLDQVRSLERNFEVENKLEPDRKMQLAKELGMRPRQVAVWFQNRRARWKTKQLERDYETLEAGFKRLKADYELVLDEKNYLKAELQR 183 69***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-19	82	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.925	87	147	IPR001356	Homeobox domain
SMART	SM00389	3.2E-15	90	151	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-15	92	145	IPR001356	Homeobox domain
CDD	cd00086	9.96E-16	92	148	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-19	94	154	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	118	127	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	127	143	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.1E-12	147	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAISSTGYYS GQNEMFMRDE STSNSLAAML SPCLPQVDLQ ARRYGGGNLE DDGRVQGVGQ 60 KRPSFATNDS TTVEDGAEDG DEGTASASHL EKKRRLTLDQ VRSLERNFEV ENKLEPDRKM 120 QLAKELGMRP RQVAVWFQNR RARWKTKQLE RDYETLEAGF KRLKADYELV LDEKNYLKAE 180 LQRLSGDTLG YKQGDDNQGA ESSKIPERDL DVSISVARQH NARASPTVDT SLAKEETRGS 240 TDGSSSDIVD ADSPRSTDSS RISAIQSHDF PPESFMVHPE LLQIYSEETL HPDSAVKLED 300 GFHEDQSCNY LLLHLDHQSG VLPWWD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382287.1	0.0	homeobox-leucine zipper protein HOX20-like
Refseq	XP_024382288.1	0.0	homeobox-leucine zipper protein HOX20-like
Refseq	XP_024382290.1	0.0	homeobox-leucine zipper protein HOX20-like
TrEMBL	A0A2K1K5M0	0.0	A0A2K1K5M0_PHYPA; Uncharacterized protein
STRING	PP1S325_51V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	6e-39	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c8_440V3.1.p
Entrez Gene	5945460

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]