PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_5110V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 776aa    MW: 82753 Da    PI: 8.3388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_5110V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31371429159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK vk+s++pr+YYrCt++ Cpv+k+vers+ed  +v++tYeg+H h+
  Pp3c8_5110V3.1.p 371 LDDGFKWRKYGQKAVKNSPHPRNYYRCTTPLCPVRKRVERSNEDAGLVITTYEGTHSHQ 429
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-33356431IPR003657WRKY domain
SuperFamilySSF1182908.5E-28364431IPR003657WRKY domain
PROSITE profilePS5081130.997366431IPR003657WRKY domain
SMARTSM007746.4E-38371430IPR003657WRKY domain
PfamPF031061.7E-24372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MADKAPNEEE AGHSEAFFDQ FLRRLDQTDH ETTVSPSTSR SSMAAPSEYS SLATSNPWPM  60
FTVSSPVNPD LQSALQGIYR SSVPSTYLST NPLAEFPWLL EDQLIESHHR GDSKLASNLE  120
SNDSGLRYST HYSLPATHGE QLSATQGSFL GSAGVENIDP SLSSQSLRWI AIKEEPASSH  180
TSAGSPVRPG SVARKEIQGH GTSTGSYGSS PKLDAGPVPR FDRTISSEER SIPSPSLTQF  240
GGSSQSPLSR SQNYWSAPAS PRLSEAVPGA SASISTSAGT SNTSLPSEST SNAGEEDEAE  300
KKEISTAGSE DARGGKRKKP WASTAGGEGG AARETESKKS EPKNKPRKRG GAKRLREPRY  360
AIKTRTDVDV LDDGFKWRKY GQKAVKNSPH PRNYYRCTTP LCPVRKRVER SNEDAGLVIT  420
TYEGTHSHQT PGFHRPAEGY FSDRATVGGG LFPNPGQSPL GPGSNLLPLP PGFDLASLQQ  480
ATALRSIPGL QPNQNIPGSN QQQQQQMNGL SRGPFSYPGQ ENMFRTSPFL GLQDPAFGIV  540
KHEPFHFTPQ APDFMSGNMA SLPHLNVRQQ FEQPGSSLAR PGAGPSQPLD FSTPNHTSVH  600
RSSSGPIPQI SSPLFTGLNF PIFPSSSNTG PASSSSTPRE SDPSNLMMCR GQTRHDAGVG  660
GSGSRIGQSL ETRINRCHPG QPNFYHVPSS ETPLPGRLIS GSHGLGSPLD PLTRTGQQRS  720
IMSTMQSHVQ QTRSSSGVSS SGEQSPESLT LPDAAGGEGL LQDMVRHGGP KVSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-26359431274WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382005.10.0probable WRKY transcription factor 10
TrEMBLA0A2K1K6840.0A0A2K1K684_PHYPA; Uncharacterized protein
STRINGPP1S198_83V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-35WRKY DNA-binding protein 57