PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_8720V3.3.p
Common NamePHYPADRAFT_65919
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 538aa    MW: 60382.1 Da    PI: 6.8319
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_8720V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.5e-3380133255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH++Fv ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Pp3c8_8720V3.3.p  80 PRLRWTPDLHRCFVTAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYRS 133
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.94876136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-3276135IPR009057Homeodomain-like
SuperFamilySSF466891.43E-1578136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2380134IPR006447Myb domain, plants
PfamPF002496.5E-881132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MQGQVDYSSG SDGGQPGQKW GDNNSGKRHS SSSGEYTPER SSESQNASGE SPRSGYQGGF  60
SGGTGRSGGT VRQYVRSKMP RLRWTPDLHR CFVTAVERLG GQDRATPKLV LQLMDVKGLT  120
IAHVKSHLQM YRSMKNDENG QSGLVQADQM MEYHGTSDTT LLHSSFGLQR NDHFQGQALH  180
VRDSDVTSVP IFPNYLHRQA GILQQFDHHP VVTSRHDGHG EWTNRAFVPS GLPSGHRDWS  240
ENKIQLVEWR KREESLAKSS HMAGNSFSNQ SRIDMHEDEW PTRPSHSVTL DWERKRQQPD  300
SIEGRFAAFQ EGPWLQPGAI IPTMASSQQL EALKKQQEKA SEWDRWQAQG ARQDLPKQSS  360
RHNASEERTS TSLDSRMLFK QLLEPSRSSS NVQEMQHRAR EDEVSHRTPG WPVMFGTENQ  420
RGFEKYAERS RHAFTEDQAD TSSPWTFSQR SEQAITSTQF NEVHDREPDS TLSLYPFSSH  480
LTQSSLSPSK PRQSMSLPDI NEDHHDFPSS LGLSETLQLS SSQGVTLDLT MSLGAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383451.10.0uncharacterized protein LOC112286102 isoform X2
TrEMBLA0A2K1K6L70.0A0A2K1K6L7_PHYPA; Uncharacterized protein
STRINGPP1S8_227V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-31G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]