PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_11130V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 1126aa    MW: 121547 Da    PI: 6.5356
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_11130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.4e-14650688341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+CnCkkskClk+YCeCfaa+ +C  +C C +C+Nk e
  Pp3c9_11130V3.2.p 650 CKRCNCKKSKCLKLYCECFAARLFCVGSCACRNCFNKPE 688
                        79**********************************976 PP
2TCR512.8e-16734772139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN 
  Pp3c9_11130V3.2.p 734 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 772
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.8E-14648689IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.95649774IPR005172CRC domain
PfamPF036383.3E-10651686IPR005172CRC domain
SMARTSM011141.6E-18734775IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.4E-12736772IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MRQVKMLTRG SKTAAEEVVR RFESCADLAS PDKRESIPLV TDVQDSPVFT FLCDLSPIQS  60
AKSVHQVQTY NELMFPPEPR FFASPYSVRR SSSRALKRVV AAERFSVQAQ AEGQENLIWQ  120
SGTLASNSMQ LNSEPTSCNI NETVATTTTS LQTQFTDYHQ PAPAVSAAMP SEMVSCIDYA  180
GENTGGTNTE HIEVAEGRLS FSSVMSQAND CVLSGIASQE SPPIHDNQNH VTMISSSHNE  240
DFGLNCNPIA KGSPELDQDT TAMAYFLAGN RGPGQESGDD EWSEDPNEVD VSRLPLQPTS  300
GHAENQSDMT NGGSGKQDSQ ANTSKQRGFR RRCLDFDVAR RKSFGITSGR EFLDSRLKDC  360
SGTDGNKTSS VLSDVGAANL DATTSEVQAV GDDSALDHDP SRTVVAFGAG NPACEDTLGA  420
ATTVQQLTSS CYQNKVDIAH AKTGESHAWK SHNSGVTGGI NSPEGVRRSP RVHKTGIGLH  480
LNSLTSSMSF KRDPPSTGGE SSKEVLATVL GLQPLASSPR GDLVSAGFPA ILNQNYTPRA  540
GSLSKRTEME TAKADTLFPC NNTVYVLTPD STRLDIDNFG VSSVESLPLT SVVSPRGRKR  600
SRPDEQDLVW QREGEVDDEL LDSPQSCKNR RLSRRKSPRS HQAEKPGDGC KRCNCKKSKC  660
LKLYCECFAA RLFCVGSCAC RNCFNKPEYE ATVLNTRQQI EARDPLAFAP KIVQAAEPTP  720
IPRDDALDTP ASARHKRGCN CKKSLCLKKY CECYQAGVGC SEGCRCEGCK NMYGRKEGPE  780
EGEGKVVEHA HSASETSQAE VTTELFKSTS GGTDQLCDDE KSNLPPITPT FARGWLGGSM  840
LRLSSSGRKR ASSDEHFASL SAQPLSRPPN SPTIFSNTLD SFDLAPYPQG DTDFSMNDVD  900
DSPTTTPTFS RSGHASSRWE GLSDFYPLTP LPLTTLQQTP DSSCVTIERS GTSPALVIQM  960
SDSSHRTTSA TSAQHHLSAR NWSPRTPGFR QPALPTPFSF DMPHQAQLSS TDQLHSPLTS  1020
TTYPGKNLQS EVGSVTAAPY DDDDSTPDSL KHADIFGSLT RRTLTKSSSP KQKRVTPPQY  1080
SSREQASFGG GRGNPLATPP GLRNSKKFIL QALPPLPSAS PLSKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-216407804126Protein lin-54 homolog
5fd3_B5e-216407804126Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.179451e-125protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383710.10.0uncharacterized protein LOC112286236 isoform X2
TrEMBLA0A2K1K2U20.0A0A2K1K2U2_PHYPA; Uncharacterized protein
STRINGPP1S29_305V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-58Tesmin/TSO1-like CXC domain-containing protein