PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_11130V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 1103aa    MW: 118619 Da    PI: 6.384
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_11130V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.3e-14627665341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+CnCkkskClk+YCeCfaa+ +C  +C C +C+Nk e
  Pp3c9_11130V3.6.p 627 CKRCNCKKSKCLKLYCECFAARLFCVGSCACRNCFNKPE 665
                        79**********************************976 PP
2TCR512.8e-16711749139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN 
  Pp3c9_11130V3.6.p 711 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 749
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.8E-14625666IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.95626751IPR005172CRC domain
PfamPF036383.2E-10628663IPR005172CRC domain
SMARTSM011141.6E-18711752IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.2E-12713749IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MFPPEPRFFA SPYSVRRSSS RALKRVVAAE RFSVQAQAEG QENLIWQSGI SRNTLSDNSI  60
SPSPLSRRSD DHHVTLCSSG PPEEVPASQP NSANLVDEGT LASNSMQLNS EPTSCNINET  120
VATTTTSLQT QFTDYHQPAP AVSAAMPSEM VSCIDYAGEN TGGTNTEHIE VAEGRLSFSS  180
VMSQANDCVL SGIASQESPP IHDNQNHVTM ISSSHNEDFG LNCNPIAKGS PELDQDTTAM  240
AYFLAGNRGP GQESGDDEWS EDPNEVDVSR LPLQPTSGHA ENQSDMTNGG SGKQDSQANT  300
SKQRGFRRRC LDFDVARRKS FGITSGREFL DSRLKDCSGT DGNKTSSVLS DVGAANLDAT  360
TSEVQAVGDD SALDHDPSRT VVAFGAGNPA CEDTLGAATT VQQLTSSCYQ NKVDIAHAKT  420
GESHAWKSHN SGVTGGINSP EGVRRSPRVH KTGIGLHLNS LTSSMSFKRD PPSTGGESSK  480
EVLATVLGLQ PLASSPRGDL VSAGFPAILN QNYTPRAGSL SKRTEMETAK ADTLFPCNNT  540
VYVLTPDSTR LDIDNFGVSS VESLPLTSVV SPRGRKRSRP DEQDLVWQRE GEVDDELLDS  600
PQSCKNRRLS RRKSPRSHQA EKPGDGCKRC NCKKSKCLKL YCECFAARLF CVGSCACRNC  660
FNKPEYEATV LNTRQQIEAR DPLAFAPKIV QAAEPTPIPR DDALDTPASA RHKRGCNCKK  720
SLCLKKYCEC YQAGVGCSEG CRCEGCKNMY GRKEGPEEGE GKVVEHAHSA SETSQAEVTT  780
ELFKSTSGGT DQLCDDEKSN LPPITPTFAR GWLGGSMLRL SSSGRKRASS DEHFASLSAQ  840
PLSRPPNSPT IFSNTLDSFD LAPYPQGDTD FSMNDVDDSP TTTPTFSRSG HASSRWEGLS  900
DFYPLTPLPL TTLQQTPDSS CVTIERSGTS PALVIQMSDS SHRTTSATSA QHHLSARNWS  960
PRTPGFRQPA LPTPFSFDMP HQAQLSSTDQ LHSPLTSTTY PGKNLQSEVG SVTAAPYDDD  1020
DSTPDSLKHA DIFGSLTRRT LTKSSSPKQK RVTPPQYSSR EQASFGGGRG NPLATPPGLR  1080
NSKKFILQAL PPLPSASPLS KG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-216177574126Protein lin-54 homolog
5fd3_B7e-216177574126Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.179451e-125protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383709.10.0uncharacterized protein LOC112286236 isoform X1
TrEMBLA0A2K1K2U20.0A0A2K1K2U2_PHYPA; Uncharacterized protein
STRINGPP1S29_305V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-58Tesmin/TSO1-like CXC domain-containing protein