PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_13190V3.2.p

Common Name

PHYPADRAFT_161053

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ZF-HD

Protein Properties

Length: 257aa MW: 28529.3 Da PI: 7.7846

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_13190V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	23.6	1.2e-07	19	59	8	55
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 +C k hA l g +DGC+ f + +++ + C ACgCH +FH + Pp3c9_13190V3.2.p 19 KCTKMHAH-L-GPGFDGCQLFDGE-----NPNDVLCGACGCHMSFHVK 59 69999974.4.4579***9887.....6788***********77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	16.066	17	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.6E-4	19	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGTAFHLDQA MINSRNRGKC TKMHAHLGPG FDGCQLFDGE NPNDVLCGAC GCHMSFHVKL 60 NLGDSKYRLE NHEVIDLEPG LKRCKMSFEA SPAESVGDNL DSNPGVEVNS GTSQEDLLRV 120 FRSNRLEEQP PVFLQPASIK PERDEIRVND SIPLYRETPL YTKLCSKLKL IQAEYPEAIH 180 GKFSIVHDDV HGYRVYCGGC DRHYGIPKPG YSLGNFERGH LASKRHKDMG AAQGKLKVQK 240 IGSYSQQAPN KTMHFG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2442	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385427.1	0.0	uncharacterized protein LOC112287047
TrEMBL	A0A2K1K318	0.0	A0A2K1K318_PHYPA; Uncharacterized protein
TrEMBL	A9RUF4	0.0	A9RUF4_PHYPA; Predicted protein
STRING	PP1S29_128V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c9_13190V3.2.p
Entrez Gene	5920926

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]