PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14170V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 427aa    MW: 45405 Da    PI: 8.4317
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14170V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.93.1e-30237290155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c9_14170V3.1.p 237 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 290
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.927234293IPR017930Myb domain
SuperFamilySSF466891.04E-19234294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30236295IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-24238290IPR006447Myb domain, plants
PfamPF002492.6E-7240289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MPDLAKTAAH VSRETRPSLL DLRVQSSISM SFDPFSPFKQ RNDAGVYGCL AEAGDDRDGR  60
GVGQFDKRGK SITADFTAEG RGDARGDGRG TAEPEVEVGL GLGLGSGGSC SNRECDRVTV  120
AERQRSGSHG GGSFSQGHPM SGVFRGGSDG ATYNPSEGRS EQSSGLPFMK NGLQGYGSGY  180
ERRPESSSYG GRGDDSSKGG GSAKNARKLA DSDFEDTDSG GGPVNSNEEA NARTLKRPRL  240
VWTPQLHKRF VDAVGHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL YLKRMQGLPS  300
DGPMANDQLF ASTSLPSNLG MQYMTNQREE VGPASYPAVG VAMPFPGGGV GPLGTAQFGG  360
YEQMSYDGVN RRFVQRPATK DRTEHISESE NGNHASPQSQ NAHSYVENRA GSPPRRLLSL  420
FPTSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33237293157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18089RGDARGDGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85031e-107gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9642159e-35EU964215.1 Zea mays clone 276988 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385661.10.0uncharacterized protein LOC112287146 isoform X1
TrEMBLA0A2K1K3620.0A0A2K1K362_PHYPA; Uncharacterized protein
STRINGPP1S29_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.32e-47G2-like family protein