PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14170V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 386aa    MW: 40789.8 Da    PI: 8.0842
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14170V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.12.7e-30196249155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c9_14170V3.3.p 196 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 249
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.927193252IPR017930Myb domain
SuperFamilySSF466898.96E-20193253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-30195254IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-24197249IPR006447Myb domain, plants
PfamPF002492.3E-7199248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIAGVYGCLA EAGDDRDGRG VGQFDKRGKS ITADFTAEGR GDARGDGRGT AEPEVEVGLG  60
LGLGSGGSCS NRECDRVTVA ERQRSGSHGG GSFSQGHPMS GVFRGGSDGA TYNPSEGRSE  120
QSSGLPFMKN GLQGYGSGYE RRPESSSYGG RGDDSSKGGG SAKNARKLAD SDFEDTDSGG  180
GPVNSNEEAN ARTLKRPRLV WTPQLHKRFV DAVGHLGIKN AVPKTIMQLM NVEGLTRENV  240
ASHLQKYRLY LKRMQGLPSD GPMANDQLFA STSLPSNLGM QYMTNQREEV GPASYPAVGV  300
AMPFPGGGVG PLGTAQFGGY EQMSYDGVNR RFVQRPATKD RTEHISESEN GNHASPQSQN  360
AHSYVENRAG SPPRRLLSLF PTSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-34196252157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13948RGDARGDGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85031e-107gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9642158e-35EU964215.1 Zea mays clone 276988 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385663.10.0two-component response regulator ARR12-like isoform X2
TrEMBLA0A2K1K3620.0A0A2K1K362_PHYPA; Uncharacterized protein
STRINGPP1S29_23V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.27e-48G2-like family protein