PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14240V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 476aa    MW: 50934.3 Da    PI: 8.7862
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14240V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.6e-30286339155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c9_14240V3.2.p 286 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 339
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.927283342IPR017930Myb domain
SuperFamilySSF466891.22E-19283343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30285344IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23287339IPR006447Myb domain, plants
PfamPF002493.0E-7289338IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRVRANVVGM TMKDEDYVLD WKHRQPKGEE LTPSSKSLKS SAMVSCFSIQ PVSSKSTADL  60
SRESHASFLD LQVQRSTPMS FNPFPPFKEL KNAGVYGCLA EAGDDRDGRG VGQFDKRGKS  120
ITADFTAEGR GDARGDGRGT AEPEVEVGLG LGLGSGGSCS NRECDRVTVA ERQRSGSHGG  180
GSFSQGHPMS GVFRGGSDGA TYNPSEGRSE QSSGLPFMKN GLQGYGSGYE RRPESSSYGG  240
RGDDSSKGGG SAKNARKLAD SDFEDTDSGG GPVNSNEEAN ARTLKRPRLV WTPQLHKRFV  300
DAVGHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGLPSD GPMANDQLFA  360
STSLPSNLGM QYMTNQREEV GPASYPAVGV AMPFPGGGVG PLGTAQFGGY EQMSYDGVNR  420
RFVQRPATKD RTEHISESEN GNHASPQSQN AHSYVENRAG SPPRRLLSLF PTSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33286342157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129138RGDARGDGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85031e-106gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9642151e-34EU964215.1 Zea mays clone 276988 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385664.10.0uncharacterized protein LOC112287147 isoform X1
TrEMBLA0A2K1K3550.0A0A2K1K355_PHYPA; Uncharacterized protein
STRINGPP1S29_23V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.27e-47G2-like family protein