PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_15250V3.1.p

Common Name

PHYPADRAFT_233441

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 337aa MW: 37367.2 Da PI: 7.2137

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_15250V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	41	3.2e-13	137	208	47	121
FLO_LFY 47 klreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrle 121 + +l+ +f ++G+r tv+ki+e+Gft++tL+ +el l++s+ + l +Ge +Gik a + +r + Pp3c9_15250V3.1.p 137 ASVDLDTFFDGFGLRPETVVKIKEMGFTAKTLMSNL-DELPSLLESINQH--HPLTLGEEWGIKGAAKKWQREQT 208 24489*************************9866.5899999999985..57889*****99876554433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	1.1E-7	140	203	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP 60 TVPDDAREEL RLIEIAREQT QKKRKPVKMR GVRGTSSASD HSSGSADHFD GKGGLGRKAE 120 RISLQHELLA RMGSIMASVD LDTFFDGFGL RPETVVKIKE MGFTAKTLMS NLDELPSLLE 180 SINQHHPLTL GEEWGIKGAA KKWQREQTFL AHPEDEKWPD SEDTCKEVAC IDTEEVTQLE 240 PYPKWIPQQQ QGQQLQSPHN HLAPPNLSVS NLSPPNQGVT DAGPGGSPGR VGYYTNLLAY 300 QAQGNARFEI MREVDVTSQR QPQVKHSFDH GAATTF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10845	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384640.1	0.0	uncharacterized protein LOC112286713 isoform X1
TrEMBL	A0A2K1K3A9	0.0	A0A2K1K3A9_PHYPA; Uncharacterized protein
STRING	PP1S78_224V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c9_15250V3.1.p
Entrez Gene	5928910

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]