PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_1800V3.1.p

Common Name

PHYPADRAFT_80954

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 477aa MW: 53559.4 Da PI: 7.9407

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_1800V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	258	308	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h rEr+RRd++ ++f L +llP+ + k K + ++i+ + v Y+ksL Pp3c9_1800V3.1.p 258 EHILRERQRRDDMSNKFLMLESLLPPgP-KFLRIKRDRSTIVDHSVAYVKSL 308 6999********************66.778888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.18E-7	249	310	No hit	No description
PROSITE profile	PS50888	12.792	254	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-11	257	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-11	257	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	258	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-5	260	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MRGLSTIDME KGYHGSEVHS DAKASSFPLD LGAMLDGTES PLQKQVYEYF QDPLSFPESI 60 GQAQGEDGFS NAFPPYLTCS SPLEAGQSSF QSMHVEIIQA AATNVLRRRE PNGFLHDNGR 120 DETQITQYTS NTETRTSTVT QFTTNGSSAQ GQMQLRSTNR NCLPHQRLYS ADHKPGNDIE 180 SKFFHAPAPP KLVHSSKPAN SHVSGENSDY ETSCSPNAQK TTGRELLSPQ LRTVRSHKSQ 240 RIGCEQRMKS KRLTDQAEHI LRERQRRDDM SNKFLMLESL LPPGPKFLRI KRDRSTIVDH 300 SVAYVKSLHE CIKNLQEKRL EILKSNACSL SGVQIKGTPK QKKQKQNNSV AYNYVSSPDL 360 RKEVLNVAFL KSCAAREESE SDTLGEERCI EKIEVHMDWP HQIVIEITCR PHPHIQSQIM 420 KEMERLEMDV SSCSITKFHN HLVCVIILKP RVVKEPSITG DDVIEGLKSA IISKDS*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MRGLSTIDME KGYHGSEVHS DAKASSFPLD LGAMLDGTES PLQKQVYEYF QDPLSFPESI  60
GQAQGEDGFS NAFPPYLTCS SPLEAGQSSF QSMHVEIIQA AATNVLRRRE PNGFLHDNGR  120
DETQITQYTS NTETRTSTVT QFTTNGSSAQ GQMQLRSTNR NCLPHQRLYS ADHKPGNDIE  180
SKFFHAPAPP KLVHSSKPAN SHVSGENSDY ETSCSPNAQK TTGRELLSPQ LRTVRSHKSQ  240
RIGCEQRMKS KRLTDQAEHI LRERQRRDDM SNKFLMLESL LPPGPKFLRI KRDRSTIVDH  300
SVAYVKSLHE CIKNLQEKRL EILKSNACSL SGVQIKGTPK QKKQKQNNSV AYNYVSSPDL  360
RKEVLNVAFL KSCAAREESE SDTLGEERCI EKIEVHMDWP HQIVIEITCR PHPHIQSQIM  420
KEMERLEMDV SSCSITKFHN HLVCVIILKP RVVKEPSITG DDVIEGLKSA IISKDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	345	PKQKKQKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384336.1	0.0	uncharacterized protein LOC112286581
TrEMBL	A0A2K1K1K8	0.0	A0A2K1K1K8_PHYPA; Uncharacterized protein
STRING	PP1S90_162V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9572	2	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	5e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_1800V3.1.p
Entrez Gene	5930348

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]