PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_18600V3.1.p

Common Name

PHYPADRAFT_229964

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 479aa MW: 51623.6 Da PI: 6.1396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_18600V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.6	6.3e-15	237	286	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N++f+ Lr ++Pka +K +Ka+i+ +++Y+ +L+ Pp3c9_18600V3.1.p 237 QRENHILAERQRREEMNEKFSALRAMIPKA-----TKKDKASIVGDTIDYVLELE 286 79**************************.....9*************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.469	236	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-12	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-17	237	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.65E-15	237	290	No hit	No description
SuperFamily	SSF47459	1.44E-16	237	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-13	242	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.96E-5	396	463	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MDQRRTSAAQ PALPSSLLLS EDLYDLLQGN RFSTTTSTTS ASPTTSTLSS GAATTLSDVK 60 SNPNSLQDPL NHFIFDQIAP APGALKMEPE IGDFMSNSYN WMPTTQLYNV DSLSCLTNYN 120 TNHLPHQLPS TSQFSYSPPQ PSVQSSSQIQ ALRDFMVYGN LADPIMPTPQ FSSAVSSRAT 180 TPIGNSLLYQ LDDVGTDSLI GISPGVQSKP QDMNLAYRAL CSEIYATERS PHRSQFQREN 240 HILAERQRRE EMNEKFSALR AMIPKATKKD KASIVGDTID YVLELEKRLK HLQACKDTAS 300 GSPFIRSLKR KSPSTSANTA SVHQDSPTDA VTKDCDAPDH RGTNPATTTT SSPSSTSPSR 360 EGHSAVNSPS DQVTQESKLQ AGKKAAAAEV EVQSLGSRAV IKIVVERRPG HVLSVLNALE 420 ECKVEVMQSN VMTVGESSIH FVTVQLEEGA SASTEELVSA ILQAINPPKA KGDPPPTC*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MDQRRTSAAQ PALPSSLLLS EDLYDLLQGN RFSTTTSTTS ASPTTSTLSS GAATTLSDVK  60
SNPNSLQDPL NHFIFDQIAP APGALKMEPE IGDFMSNSYN WMPTTQLYNV DSLSCLTNYN  120
TNHLPHQLPS TSQFSYSPPQ PSVQSSSQIQ ALRDFMVYGN LADPIMPTPQ FSSAVSSRAT  180
TPIGNSLLYQ LDDVGTDSLI GISPGVQSKP QDMNLAYRAL CSEIYATERS PHRSQFQREN  240
HILAERQRRE EMNEKFSALR AMIPKATKKD KASIVGDTID YVLELEKRLK HLQACKDTAS  300
GSPFIRSLKR KSPSTSANTA SVHQDSPTDA VTKDCDAPDH RGTNPATTTT SSPSSTSPSR  360
EGHSAVNSPS DQVTQESKLQ AGKKAAAAEV EVQSLGSRAV IKIVVERRPG HVLSVLNALE  420
ECKVEVMQSN VMTVGESSIH FVTVQLEEGA SASTEELVSA ILQAINPPKA KGDPPPTC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384192.1	0.0	transcription factor FAMA-like isoform X2
TrEMBL	A9SKT1	0.0	A9SKT1_PHYPA; Predicted protein
STRING	PP1S89_172V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_18600V3.1.p
Entrez Gene	5930212

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]