PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 459aa    MW: 51133.2 Da    PI: 5.2175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.7e-11232274855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++ +Lr+l+Pk +      K++Ka+i+   + Y+k+Lq
  Pp3c9_1880V3.1.p 232 SERKRRKKLNDGLYTLRSLVPKiS------KMDKASIVGDSIVYVKELQ 274
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16229293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-11231278No hitNo description
Gene3DG3DSA:4.10.280.106.5E-17231291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8232274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.25E-7380455No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-5381457No hitNo description
PROSITE profilePS5167110.876384458IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQSEVLFQPA QRFDSRTDSE FLRKLKENPR AELKRGSSER FHLSNAEMDD VKRKYGWNDT  60
KDSLELIYPD QYHPVMNDKK PSSIKESQDL GIQDWLPECG ELPDRKLSRP YSMARKYDDA  120
SAARSSMHGS QYLAQLAEAH KFSLEPASES NNLAEWVDIP DVKQKLLRSE SEPSYALVSP  180
SEKQTQSCDM EQQLRRAGSI SSEEFVEFEV PPGRGRRHNN NTSGLASKNL VSERKRRKKL  240
NDGLYTLRSL VPKISKMDKA SIVGDSIVYV KELQQQIQSM ESEIAEMEEN LLSSTGVAAE  300
CSGGSRDSTS LESKEPAAGS SSSCEKGTEE AMLGVELNDN TVLAASEKTS SSADSQGPSQ  360
EHSPVVQRKI INMEVAKMED KTYQLRATCQ KGPGILVQLT RALESLDVDI LTAHHTSFQE  420
NMLDTFIVEM RSLDVKEAEH VRKALLDAVA QHGLAVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119400.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385083.10.0transcription factor ABORTED MICROSPORES-like isoform X5
TrEMBLA0A2K1K1M00.0A0A2K1K1M0_PHYPA; Uncharacterized protein
STRINGPP1S90_171V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-28bHLH family protein