PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1880V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 539aa    MW: 60074.5 Da    PI: 5.7019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1880V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-11312354855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++ +Lr+l+Pk +      K++Ka+i+   + Y+k+Lq
  Pp3c9_1880V3.4.p 312 SERKRRKKLNDGLYTLRSLVPKiS------KMDKASIVGDSIVYVKELQ 354
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16309373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-11311358No hitNo description
Gene3DG3DSA:4.10.280.108.2E-17311371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8312354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.17E-7460535No hitNo description
Gene3DG3DSA:3.30.70.2601.3E-5461537No hitNo description
PROSITE profilePS5167110.876464538IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSFASASLLW QIVQLIVQLI IVQRGKRLHV KHLDPDTMDT RTGRTDTFPM PVTNIDVYNR  60
SGQVIEAGSK SYAPSTDKIT MQSEVLFQPA QRFDSRTDSE FLRKLKENPR AELKRGSSER  120
FHLSNAEMDD VKRKYGWNDT KDSLELIYPD QYHPVMNDKK PSSIKESQDL GIQDWLPECG  180
ELPDRKLSRP YSMARKYDDA SAARSSMHGS QYLAQLAEAH KFSLEPASES NNLAEWVDIP  240
DVKQKLLRSE SEPSYALVSP SEKQTQSCDM EQQLRRAGSI SSEEFVEFEV PPGRGRRHNN  300
NTSGLASKNL VSERKRRKKL NDGLYTLRSL VPKISKMDKA SIVGDSIVYV KELQQQIQSM  360
ESEIAEMEEN LLSSTGVAAE CSGGSRDSTS LESKEPAAGS SSSCEKGTEE AMLGVELNDN  420
TVLAASEKTS SSADSQGPSQ EHSPVVQRKI INMEVAKMED KTYQLRATCQ KGPGILVQLT  480
RALESLDVDI LTAHHTSFQE NMLDTFIVEM RSLDVKEAEH VRKALLDAVA QHGLAVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312319ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119400.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385081.10.0uncharacterized protein LOC112286915 isoform X3
TrEMBLA0A2K1K1M00.0A0A2K1K1M0_PHYPA; Uncharacterized protein
STRINGPP1S90_171V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-28bHLH family protein