PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1880V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 578aa    MW: 64152 Da    PI: 6.5216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1880V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11351393855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++ +Lr+l+Pk +      K++Ka+i+   + Y+k+Lq
  Pp3c9_1880V3.5.p 351 SERKRRKKLNDGLYTLRSLVPKiS------KMDKASIVGDSIVYVKELQ 393
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16348412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17350410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-11350397No hitNo description
PfamPF000101.5E-8351393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.09E-7499574No hitNo description
Gene3DG3DSA:3.30.70.2601.5E-5500576No hitNo description
PROSITE profilePS5167110.876503577IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MLRIRGSECR ELRGIVATIE GFAVTIHAES FTCRTGGGRG YRPGGFCHSA AFRLFVSSKS  60
GLRGKRLHVK HLDPDTMDTR TGRTDTFPMP VTNIDVYNRS GQVIEAGSKS YAPSTDKITM  120
QSEVLFQPAQ RFDSRTDSEF LRKLKENPRA ELKRGSSERF HLSNAEMDDV KRKYGWNDTK  180
DSLELIYPDQ YHPVMNDKKP SSIKESQDLG IQDWLPECGE LPDRKLSRPY SMARKYDDAS  240
AARSSMHGSQ YLAQLAEAHK FSLEPASESN NLAEWVDIPD VKQKLLRSES EPSYALVSPS  300
EKQTQSCDME QQLRRAGSIS SEEFVEFEVP PGRGRRHNNN TSGLASKNLV SERKRRKKLN  360
DGLYTLRSLV PKISKMDKAS IVGDSIVYVK ELQQQIQSME SEIAEMEENL LSSTGVAAEC  420
SGGSRDSTSL ESKEPAAGSS SSCEKGTEEA MLGVELNDNT VLAASEKTSS SADSQGPSQE  480
HSPVVQRKII NMEVAKMEDK TYQLRATCQK GPGILVQLTR ALESLDVDIL TAHHTSFQEN  540
MLDTFIVEMR SLDVKEAEHV RKALLDAVAQ HGLAVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351358ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119400.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385079.10.0uncharacterized protein LOC112286915 isoform X1
TrEMBLA0A2K1K1M00.0A0A2K1K1M0_PHYPA; Uncharacterized protein
STRINGPP1S90_171V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-28bHLH family protein