PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_4590V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 191aa MW: 21307.9 Da PI: 4.5552

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_4590V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.6	7.2e-19	7	61	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r ++ +g+Wv+eIr+p g ++ r++lg+f +aeeAa a++aa+++l+g Pp3c9_4590V3.3.p 7 TRYRGIRMRR-WGKWVSEIREPQRSGsRTNRIWLGSFRSAEEAAHAYDAAMLCLRG 61 68***998.******97788788***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.26E-25	7	70	No hit	No description
Pfam	PF00847	8.6E-12	7	61	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-28	8	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.102	8	69	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-19	8	69	IPR016177	DNA-binding domain
SMART	SM00380	8.8E-30	8	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-9	9	20	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-9	35	51	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSGNSNTRYR GIRMRRWGKW VSEIREPQRS GSRTNRIWLG SFRSAEEAAH AYDAAMLCLR 60 GSTDNLNFPN FNYRLPPGSP GRYSTREIQA AAAAAAAQSA GRPFSYNNFM SPGSSSDSDE 120 EIEDITYTGS STNTHYGTES QASFNDNWRS YDDDPYNQVH EMARGMMMQP PKSDSDDSDE 180 DSDDGDPPLW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-15	9	69	6	63	ATERF1
3gcc_A	3e-15	9	69	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384269.1	1e-139	ethylene-responsive transcription factor ERF039-like
Refseq	XP_024384270.1	1e-139	ethylene-responsive transcription factor ERF039-like
Refseq	XP_024384271.1	1e-139	ethylene-responsive transcription factor ERF039-like
Refseq	XP_024384272.1	1e-139	ethylene-responsive transcription factor ERF039-like
Refseq	XP_024384273.1	1e-139	ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	3e-22	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2K1K207	1e-137	A0A2K1K207_PHYPA; Uncharacterized protein
STRING	PP1S199_50V6.1	1e-138	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	4e-18	ERF family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_4590V3.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]