PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_4910V3.2.p

Common Name

PHYPADRAFT_169169

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 407aa MW: 44349.9 Da PI: 6.5055

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_4910V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.5e-37	66	125	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k+l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk++++s Pp3c9_4910V3.2.p 66 PKNLPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKHSRS 125 67899**************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	65	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-32	68	123	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MHLPLQHQAR LAGSFDDENE ELDAQLQANS ASHSHSHHSQ EDDASQSQGS KGSGGDAAVP 60 DGAPKPKNLP CPRCQSMNTK FCYYNNYSVN QPRHFCRNCQ RYWTVGGTLR NVPVGGGSRK 120 KHSRSRSRSD PYYRPEPNPS HDSDGEMEQI GNPLHPGLAA AAMAGIIPQD IASLHSEAGF 180 PDFGELSEAP FHPNKIYSLL QLALLQNEGM YGIPGMPFTV GNPDHEQAEL HQLFQGQAAS 240 NPGNLLTAAA AMMFMPELDP AAVALLHKAT LWAEAQQVQA MARRQTAQSA PPWVEERECK 300 PTVSAHMNRE IAAMEELRHR QQAAAGSHRR PGFWETALMH SRPNKRQAWD GTKPSLSPPS 360 VQHGSASTVD EESGNPVNAS GFSHNYDDTS SWGSAGFHPG PDLYYQ*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MHLPLQHQAR LAGSFDDENE ELDAQLQANS ASHSHSHHSQ EDDASQSQGS KGSGGDAAVP  60
DGAPKPKNLP CPRCQSMNTK FCYYNNYSVN QPRHFCRNCQ RYWTVGGTLR NVPVGGGSRK  120
KHSRSRSRSD PYYRPEPNPS HDSDGEMEQI GNPLHPGLAA AAMAGIIPQD IASLHSEAGF  180
PDFGELSEAP FHPNKIYSLL QLALLQNEGM YGIPGMPFTV GNPDHEQAEL HQLFQGQAAS  240
NPGNLLTAAA AMMFMPELDP AAVALLHKAT LWAEAQQVQA MARRQTAQSA PPWVEERECK  300
PTVSAHMNRE IAAMEELRHR QQAAAGSHRR PGFWETALMH SRPNKRQAWD GTKPSLSPPS  360
VQHGSASTVD EESGNPVNAS GFSHNYDDTS SWGSAGFHPG PDLYYQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9367	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385660.1	0.0	uncharacterized protein LOC112287144
TrEMBL	A9TBM0	0.0	A9TBM0_PHYPA; Predicted protein
STRING	PP1S199_87V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_4910V3.2.p
Entrez Gene	5939185

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]