PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_7400V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1199aa MW: 130352 Da PI: 7.7941

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_7400V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3e-15	716	754	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag +C +C C dC+Nk e Pp3c9_7400V3.4.p 716 CKRCNCKKSKCLKLYCECFAAGLYCVGSCACRDCFNKPE 754 79**********************************976 PP
2	TCR	51.1	2.7e-16	800	839	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+Nk Pp3c9_7400V3.4.p 800 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCMNKY 839 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.0E-14	714	755	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.332	715	840	IPR005172	CRC domain
Pfam	PF03638	7.0E-11	717	752	IPR005172	CRC domain
SMART	SM01114	2.3E-17	800	841	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.2E-11	802	838	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence Send to blast
MTFPQEHRIF ASPRSARRSS SSSLKRFVAA ERFSAQAQAE GRESLGWHQT PTFSRSTLSD 60 GAPSSSPLKR SSGDHQVTPC SRRQTEALAS SQSDGAKVEV SRDDVYVAED PGGQGKFGSS 120 IHLKPEPASC EMDRTAVVNA RFQTQFTDYH QLDPAVSAAM PSEVVSCIDG KDEMLEVTRT 180 EHNYATERRQ STSSLISHPI DCVLPSQESK CHEQSDHRRV SVTSSSHIED HGLSFSTVAK 240 GSPELDRETT AMAYFLAGNQ DLGQDTGEEW SEDSSEVVVP RLPLRPTPGY SVKPSDMINE 300 RVVKQEKRMV DAITPKSGLV PSTEDGHDTD TILATENVNH QQSVLSQRVD NAGQRGFRRR 360 CLDFDASVAR RKSLGSMSGR KSLGSRLKDC SGISVADDSN VSGFGDVAPA SSDATTTRVR 420 APPNDFSNSN DTSRVDSDSG LHTRGSPVCA DTFGTTAKLP LTSCSHQKNM DVLNAKTGEA 480 HSRKVQNSGA SPAGTPPEGV RRSPRNRPTG IGLHLNSLTS SMSFKRDYSS VRGESSKGVL 540 ATVLGLQPVA RTDLTEDSLS EGLGSTGYSA NLNQNFNSGV DRQALDNSNN GLTKKLDYHS 600 QVDSRTLMEL NGAETTLPAS SIKRVNIPAP DFTSLNIENL SPLEEPFSLT PAAHLPRLVS 660 PRGQKRPQPH HQELMQQPEG EAVDELLDSP QSAKRRRLSR RKSTVSSQSE RSGDGCKRCN 720 CKKSKCLKLY CECFAAGLYC VGSCACRDCF NKPEYIETVI NTRQQIESRN PLAFAPKIVQ 780 GAESSPVPGD EVLDTPASAR HKRGCNCKKS LCLKKYCECY QAGVGCSEGC RCEGCMNKYG 840 RKEGPEGDEK DGEQANFVRE DSQSEDPIEL LNRMSGKTDR LRDNSTKPNL SPNTPTFEYD 900 LHGRPMHSLR TSLRKRIDPS DELCHSPLAQ PVSRPSKSPT RFAHALDAFH LVPSYQGHSD 960 ADFSMSGAGD SPMTTPTFAR MGHLSPRWDG LGDLCTLTPM QTLAPLRPTP GSSCITVERP 1020 GASPAFSSHL TESPYQAAAS TNVHQRHASS RHWSPHSPRF RQPAPRSPFD TPRQSQLSCT 1080 DQGHPTPLTP AMQSYQLLSG KNLQSELELA KVNVADDDGT PEFTKYADET RDSSPSRSTV 1140 TKSSSPKQKR VTPPRYSGNR EPSNSSNGGC GSNSLASSPV SRNARKFILQ ALPTFTND*

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence Send to blast

MTFPQEHRIF ASPRSARRSS SSSLKRFVAA ERFSAQAQAE GRESLGWHQT PTFSRSTLSD  60
GAPSSSPLKR SSGDHQVTPC SRRQTEALAS SQSDGAKVEV SRDDVYVAED PGGQGKFGSS  120
IHLKPEPASC EMDRTAVVNA RFQTQFTDYH QLDPAVSAAM PSEVVSCIDG KDEMLEVTRT  180
EHNYATERRQ STSSLISHPI DCVLPSQESK CHEQSDHRRV SVTSSSHIED HGLSFSTVAK  240
GSPELDRETT AMAYFLAGNQ DLGQDTGEEW SEDSSEVVVP RLPLRPTPGY SVKPSDMINE  300
RVVKQEKRMV DAITPKSGLV PSTEDGHDTD TILATENVNH QQSVLSQRVD NAGQRGFRRR  360
CLDFDASVAR RKSLGSMSGR KSLGSRLKDC SGISVADDSN VSGFGDVAPA SSDATTTRVR  420
APPNDFSNSN DTSRVDSDSG LHTRGSPVCA DTFGTTAKLP LTSCSHQKNM DVLNAKTGEA  480
HSRKVQNSGA SPAGTPPEGV RRSPRNRPTG IGLHLNSLTS SMSFKRDYSS VRGESSKGVL  540
ATVLGLQPVA RTDLTEDSLS EGLGSTGYSA NLNQNFNSGV DRQALDNSNN GLTKKLDYHS  600
QVDSRTLMEL NGAETTLPAS SIKRVNIPAP DFTSLNIENL SPLEEPFSLT PAAHLPRLVS  660
PRGQKRPQPH HQELMQQPEG EAVDELLDSP QSAKRRRLSR RKSTVSSQSE RSGDGCKRCN  720
CKKSKCLKLY CECFAAGLYC VGSCACRDCF NKPEYIETVI NTRQQIESRN PLAFAPKIVQ  780
GAESSPVPGD EVLDTPASAR HKRGCNCKKS LCLKKYCECY QAGVGCSEGC RCEGCMNKYG  840
RKEGPEGDEK DGEQANFVRE DSQSEDPIEL LNRMSGKTDR LRDNSTKPNL SPNTPTFEYD  900
LHGRPMHSLR TSLRKRIDPS DELCHSPLAQ PVSRPSKSPT RFAHALDAFH LVPSYQGHSD  960
ADFSMSGAGD SPMTTPTFAR MGHLSPRWDG LGDLCTLTPM QTLAPLRPTP GSSCITVERP  1020
GASPAFSSHL TESPYQAAAS TNVHQRHASS RHWSPHSPRF RQPAPRSPFD TPRQSQLSCT  1080
DQGHPTPLTP AMQSYQLLSG KNLQSELELA KVNVADDDGT PEFTKYADET RDSSPSRSTV  1140
TKSSSPKQKR VTPPRYSGNR EPSNSSNGGC GSNSLASSPV SRNARKFILQ ALPTFTND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-21	709	846	4	126	Protein lin-54 homolog
5fd3_B	6e-21	709	846	4	126	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	693	697	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384566.1	0.0	uncharacterized protein LOC112286675 isoform X2
TrEMBL	A0A2K1K2D4	0.0	A0A2K1K2D4_PHYPA; Uncharacterized protein
STRING	PP1S220_14V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	8e-60	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c9_7400V3.4.p