PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3s241_30V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 328aa    MW: 36842.6 Da    PI: 7.6173
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3s241_30V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-13273321247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
  Pp3s241_30V3.1.p 273 KKWSNEEVELLKRGVQEHGKGHWKKILNDNAdafRGRTEVDLKDKWRNL 321
                       58***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.562267326IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-14268321IPR009057Homeodomain-like
SuperFamilySSF466898.22E-15269322IPR009057Homeodomain-like
SMARTSM007175.1E-9271324IPR001005SANT/Myb domain
CDDcd116605.18E-20273323No hitNo description
PfamPF002492.3E-10273321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNLELWRPRL GFIGSLILEE FAASTIAGKR SLRAQSSVRS PHPVAISDSE DRSFHDTQET  60
LVDRRFEQLE GALRASQSEL QNILDVKIVE VKRSVVVMED AHHSLKKLVK DQAEVCKQHV  120
RLKNPGTTSQ CLGLSVLNLP PLAHAPGLKD DNMYEDKDRP SSNAHCSQLS SEYPHPSNSQ  180
DPYSSPSHPL LLDPGLHNTK ETACALESSW SPSKITVRVG FMLGGQREKR PFQEIDLCGE  240
VLICNSEQTV RECKHGESLL GIGSGSTQRR TQKKWSNEEV ELLKRGVQEH GKGHWKKILN  300
DNADAFRGRT EVDLKDKWRN LEKYERL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1I9V90.0A0A2K1I9V9_PHYPA; Uncharacterized protein
STRINGPP1S966_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-12MYB_related family protein