PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3s76_20V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 568aa MW: 64160.6 Da PI: 8.4718

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3s76_20V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.9e-12	411	459	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ eE ell+++v+++G+g+Wk I + gRt+ ++k++w+++ Pp3s76_20V3.1.p 411 KKWSNEEVELLKRGVQEHGKGHWKEILNNNTdafRGRTEVDLKDKWRNL 459 58**************************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.969	405	464	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-14	406	460	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.21E-15	407	462	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-8	409	462	IPR001005	SANT/Myb domain
CDD	cd11660	6.60E-19	411	461	No hit	No description
Pfam	PF00249	1.4E-9	411	459	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MERTPREGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTGVLRL RQMLLIRDLT 60 QQLGDPIPNK IDVDLALQYL EGLENSLASK PAEELEESVR GGLLQPALER KDLERPLLEL 120 KSELRTSLGE KRVDAQQAKV IRDEFRALAA KAWILLGPLV LEEFAASTIA GKQSLRAQSS 180 VRGNSDSEDR SFHDTQETLV DRRFEQLEGA LRASQSELQN ILDVKIVEVK RSVVVLEDVH 240 HSLKKLVKDQ AEVCKQHVRL KNPGTTSHCL GLSVLNLPPL AHAPGLEDDN MYEDKDRPSS 300 NAHCSQLSSE NPHPSNSQDP YSSPSHPLLL DPGLHNTKET ACALESSWSP SKITGRVGFM 360 LGGQREKRPF QEIDLCGEVL ICNSEQTVRE CKHGESLLGI GSGSTQRRTQ KKWSNEEVEL 420 LKRGVQEHGK GHWKEILNNN TDAFRGRTEV DLKDKWRNLE KYERLQYGTT SSLTIEPHPY 480 LRSPAFNPPN GTQYSRIRFL TQQHRDSISI SPHNTLDLRL FNNRNGSQSL DFGVTSKENK 540 TKERKEKKKE KRQTRDRTKL APGSTLS*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MERTPREGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTGVLRL RQMLLIRDLT  60
QQLGDPIPNK IDVDLALQYL EGLENSLASK PAEELEESVR GGLLQPALER KDLERPLLEL  120
KSELRTSLGE KRVDAQQAKV IRDEFRALAA KAWILLGPLV LEEFAASTIA GKQSLRAQSS  180
VRGNSDSEDR SFHDTQETLV DRRFEQLEGA LRASQSELQN ILDVKIVEVK RSVVVLEDVH  240
HSLKKLVKDQ AEVCKQHVRL KNPGTTSHCL GLSVLNLPPL AHAPGLEDDN MYEDKDRPSS  300
NAHCSQLSSE NPHPSNSQDP YSSPSHPLLL DPGLHNTKET ACALESSWSP SKITGRVGFM  360
LGGQREKRPF QEIDLCGEVL ICNSEQTVRE CKHGESLLGI GSGSTQRRTQ KKWSNEEVEL  420
LKRGVQEHGK GHWKEILNNN TDAFRGRTEV DLKDKWRNLE KYERLQYGTT SSLTIEPHPY  480
LRSPAFNPPN GTQYSRIRFL TQQHRDSISI SPHNTLDLRL FNNRNGSQSL DFGVTSKENK  540
TKERKEKKKE KRQTRDRTKL APGSTLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	543	551	RKEKKKEKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1I9J9	0.0	A0A2K1I9J9_PHYPA; Uncharacterized protein
STRING	PP1S471_2V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-12	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3s76_20V3.1.p