PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G000600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 396aa    MW: 42927.4 Da    PI: 8.291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G000600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12427226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k+e+C++f+r G C++GdrCkF H+
  Prupe.1G000600.1.p  4 KREPCKYFQR-GSCQFGDRCKFLHV 27
                        89********.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.638229IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.08E-6326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-8427IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSNQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLGKPQGALL KPNHSGQNPL PSASQNAFLQ AANNSAAPSL SSFTQLGTSL  240
NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGSHGSQFP ATAHVNVFPS  300
STGFGNTGVM RHETNPFSTL AVSSQIPSAT TGLPPILSDG PTSASNAVRQ STTEVQFLTN  360
MQREKISGET SIWLKKTWSP GEIPEDEPPD ALVEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.20690.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G000600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418064.10.0zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLA0A251QQG50.0A0A251QQG5_PRUPE; Uncharacterized protein
STRINGXP_008224558.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.16e-64C3H family protein