PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G032200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17823.7 Da    PI: 10.4421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G032200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.2e-081958645
                        HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k +r+v+fskRr g++ K +  +   +ae+ ++++s  g+
  Prupe.1G032200.1.p 19 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSGAGR 58
                        679********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0094163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.4791960IPR002100Transcription factor, MADS-box
PfamPF003192.9E-101960IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-111981IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKRKASEVTM EQKEAKVYKN RRYVSFSKRR SGLFSKGKDF CKKFEAEIGI VVLSGAGRPY  60
WSPDNPSLDA VLDRFMQSDQ APTNAIDFKV RLQKKRKREE PDNEVQGQLA EEVKSCRTVK  120
DMFSLRDKYL EMRIGCLRHK IRNHYMYKPM F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G032200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410301.19e-84agamous-like MADS-box protein AGL31
TrEMBLA0A251QS391e-108A0A251QS39_PRUPE; Uncharacterized protein
STRINGEMJ260815e-91(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1884856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-13AGAMOUS-like 61