PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G034100.2.p
Common NamePRUPE_ppa015007mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 233aa    MW: 25710.2 Da    PI: 9.2882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G034100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-054769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Prupe.1G034100.2.p 47 YTCSFCKREFRSAQALGGHMNVH 69
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-64473No hitNo description
PfamPF139127.9E-74771IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244774IPR007087Zinc finger, C2H2
SMARTSM003550.00384769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKNRLSNNL KEHGRAIRDS NNKRIIHCSQ SCEEDYINGF SWPPRSYTCS FCKREFRSAQ  60
ALGGHMNVHR KDRARLKNSP PIDAQYTSTI FNLNLNLKPN PNPNFLSTSS PSSSSSLVSP  120
FSSSLSLPSL ISPPLPPHPP PIFSVPSSEN MKWVVGGTLF NHPLNLKASD LSSKLKGAKS  180
LCGVGQEDQD GCIKTLKKAA DPRQILRLDL EIGMFGDTNK EDLDLELRLG YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-144269229superman protein
2l1o_A3e-144269229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G034100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226157.11e-170transcriptional regulator SUPERMAN
TrEMBLA0A251QV451e-168A0A251QV45_PRUPE; Uncharacterized protein
TrEMBLM5XPB21e-169M5XPB2_PRUPE; Uncharacterized protein
STRINGEMJ273561e-170(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein